Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2066 and Shewana3_2067 are separated by 76 nucleotides Shewana3_2067 and Shewana3_2068 are separated by 235 nucleotides Shewana3_2068 and Shewana3_2069 are separated by 109 nucleotides
Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data) , at 2,473,107 to 2,474,609
_2066
Shewana3_2067: Shewana3_2067 - HAD family hydrolase (RefSeq), at 2,474,686 to 2,475,294
_2067
Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246
_2068
Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303
_2069
Position (kb)
2475
2476
2477 Strain fitness (log2 ratio)
-2
-1
0
1 at 2474.560 kb on - strand at 2474.620 kb on + strand at 2474.801 kb on + strand, within Shewana3_2067 at 2475.153 kb on + strand, within Shewana3_2067 at 2475.367 kb on - strand at 2475.513 kb on - strand at 2475.563 kb on + strand at 2475.801 kb on + strand, within Shewana3_2068 at 2475.903 kb on + strand, within Shewana3_2068 at 2476.059 kb on + strand, within Shewana3_2068 at 2476.391 kb on - strand at 2477.034 kb on - strand, within Shewana3_2069 at 2477.072 kb on - strand, within Shewana3_2069
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,474,560 - +0.4 2,474,620 + -0.4 2,474,801 + Shewana3_2067 0.19 -1.8 2,475,153 + Shewana3_2067 0.77 +0.4 2,475,367 - +1.2 2,475,513 - -0.8 2,475,563 + -1.3 2,475,801 + Shewana3_2068 0.38 +0.1 2,475,903 + Shewana3_2068 0.52 -0.3 2,476,059 + Shewana3_2068 0.74 -1.1 2,476,391 - +0.5 2,477,034 - Shewana3_2069 0.72 +0.9 2,477,072 - Shewana3_2069 0.76 +0.9
Or see this region's nucleotide sequence