Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1765

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcd and Shewana3_1764 are separated by 5 nucleotidesShewana3_1764 and Shewana3_1765 overlap by 4 nucleotidesShewana3_1765 and tmk overlap by 4 nucleotidestmk and Shewana3_1767 overlap by 7 nucleotides Shewana3_1763: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,077,873 to 2,078,454 dcd Shewana3_1764: Shewana3_1764 - aminodeoxychorismate lyase apoprotein (RefSeq), at 2,078,460 to 2,079,269 _1764 Shewana3_1765: Shewana3_1765 - aminodeoxychorismate lyase (RefSeq), at 2,079,266 to 2,080,276 _1765 Shewana3_1766: tmk - thymidylate kinase (RefSeq), at 2,080,273 to 2,080,902 tmk Shewana3_1767: Shewana3_1767 - DNA polymerase III, delta prime subunit (RefSeq), at 2,080,896 to 2,081,852 _1767 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2078.499 kb on - strandat 2078.816 kb on + strand, within Shewana3_1764at 2079.211 kb on + strandat 2079.374 kb on + strand, within Shewana3_1765at 2079.380 kb on + strand, within Shewana3_1765at 2079.398 kb on + strand, within Shewana3_1765at 2079.482 kb on + strand, within Shewana3_1765at 2079.520 kb on + strand, within Shewana3_1765at 2079.626 kb on + strand, within Shewana3_1765at 2079.769 kb on + strand, within Shewana3_1765at 2080.078 kb on + strand, within Shewana3_1765

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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2,078,499 - -4.5
2,078,816 + Shewana3_1764 0.44 -2.2
2,079,211 + -2.8
2,079,374 + Shewana3_1765 0.11 -0.3
2,079,380 + Shewana3_1765 0.11 +0.4
2,079,398 + Shewana3_1765 0.13 +1.5
2,079,482 + Shewana3_1765 0.21 +1.6
2,079,520 + Shewana3_1765 0.25 +1.2
2,079,626 + Shewana3_1765 0.36 -0.6
2,079,769 + Shewana3_1765 0.50 +1.2
2,080,078 + Shewana3_1765 0.80 +1.0

Or see this region's nucleotide sequence