Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0664 and Shewana3_0665 are separated by 655 nucleotides Shewana3_0665 and Shewana3_0666 are separated by 239 nucleotides
Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022
_0664
Shewana3_0665: Shewana3_0665 - OmpA/MotB domain-containing protein (RefSeq), at 786,678 to 787,370
_0665
Shewana3_0666: Shewana3_0666 - molybdate ABC transporter periplasmic molybdate-binding protein (RefSeq), at 787,610 to 788,437
_0666
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 785.721 kb on + strand at 785.742 kb on - strand at 785.787 kb on + strand at 785.801 kb on + strand at 785.821 kb on + strand, within Shewana3_0664 at 786.038 kb on + strand at 786.097 kb on + strand at 786.105 kb on - strand at 786.118 kb on + strand at 786.118 kb on + strand at 786.120 kb on - strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.128 kb on - strand at 786.145 kb on - strand at 786.291 kb on - strand at 786.306 kb on - strand at 786.316 kb on - strand at 786.436 kb on - strand at 786.624 kb on + strand at 786.624 kb on + strand at 786.763 kb on + strand, within Shewana3_0665 at 787.063 kb on + strand, within Shewana3_0665 at 787.154 kb on - strand, within Shewana3_0665 at 787.696 kb on + strand, within Shewana3_0666 at 787.707 kb on + strand, within Shewana3_0666 at 787.712 kb on - strand, within Shewana3_0666 at 787.731 kb on + strand, within Shewana3_0666 at 787.888 kb on + strand, within Shewana3_0666 at 787.896 kb on - strand, within Shewana3_0666 at 787.942 kb on + strand, within Shewana3_0666 at 787.970 kb on + strand, within Shewana3_0666 at 787.996 kb on - strand, within Shewana3_0666 at 788.165 kb on - strand, within Shewana3_0666 at 788.190 kb on - strand, within Shewana3_0666 at 788.316 kb on + strand, within Shewana3_0666
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 785,721 + -0.1 785,742 - -0.1 785,787 + +0.3 785,801 + +0.3 785,821 + Shewana3_0664 0.14 +0.2 786,038 + +0.9 786,097 + -0.6 786,105 - +0.5 786,118 + +0.3 786,118 + -1.3 786,120 - +0.7 786,126 - -1.0 786,126 - +0.6 786,128 - -0.9 786,145 - -1.3 786,291 - +0.6 786,306 - -1.8 786,316 - +1.0 786,436 - -0.1 786,624 + +0.3 786,624 + -1.6 786,763 + Shewana3_0665 0.12 +0.0 787,063 + Shewana3_0665 0.56 -1.0 787,154 - Shewana3_0665 0.69 -1.3 787,696 + Shewana3_0666 0.10 -0.0 787,707 + Shewana3_0666 0.12 -3.0 787,712 - Shewana3_0666 0.12 +0.6 787,731 + Shewana3_0666 0.15 +0.4 787,888 + Shewana3_0666 0.34 -1.1 787,896 - Shewana3_0666 0.35 +0.5 787,942 + Shewana3_0666 0.40 -0.1 787,970 + Shewana3_0666 0.43 -1.1 787,996 - Shewana3_0666 0.47 +0.4 788,165 - Shewana3_0666 0.67 -0.1 788,190 - Shewana3_0666 0.70 +0.4 788,316 + Shewana3_0666 0.85 +0.2
Or see this region's nucleotide sequence