Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0638 and Shewana3_0639 overlap by 1 nucleotides Shewana3_0639 and Shewana3_0640 are separated by 42 nucleotides
Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 751,959 to 755,630
_0638
Shewana3_0639: Shewana3_0639 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) <small>(from data)</small>, at 755,630 to 756,295
_0639
Shewana3_0640: Shewana3_0640 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) <small>(from data)</small>, at 756,338 to 757,558
_0640
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.696 kb on - strand, within Shewana3_0638 at 754.754 kb on + strand, within Shewana3_0638 at 754.807 kb on + strand, within Shewana3_0638 at 754.950 kb on + strand, within Shewana3_0638 at 755.027 kb on + strand, within Shewana3_0638 at 755.097 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.199 kb on + strand, within Shewana3_0638 at 755.207 kb on - strand, within Shewana3_0638 at 755.309 kb on + strand at 755.425 kb on - strand at 755.513 kb on - strand at 755.578 kb on - strand at 755.642 kb on - strand at 755.695 kb on - strand at 755.784 kb on - strand, within Shewana3_0639 at 755.935 kb on + strand, within Shewana3_0639 at 756.164 kb on - strand, within Shewana3_0639 at 756.164 kb on - strand, within Shewana3_0639 at 756.242 kb on + strand at 756.442 kb on + strand at 756.515 kb on - strand, within Shewana3_0640 at 756.553 kb on + strand, within Shewana3_0640 at 756.558 kb on + strand, within Shewana3_0640 at 756.634 kb on + strand, within Shewana3_0640 at 756.662 kb on - strand, within Shewana3_0640 at 756.727 kb on + strand, within Shewana3_0640 at 756.747 kb on + strand, within Shewana3_0640 at 756.905 kb on - strand, within Shewana3_0640 at 757.034 kb on + strand, within Shewana3_0640 at 757.133 kb on + strand, within Shewana3_0640 at 757.228 kb on + strand, within Shewana3_0640 at 757.255 kb on + strand, within Shewana3_0640 at 757.257 kb on + strand, within Shewana3_0640
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 754,696 - Shewana3_0638 0.75 -1.2 754,754 + Shewana3_0638 0.76 -1.2 754,807 + Shewana3_0638 0.78 -0.5 754,950 + Shewana3_0638 0.81 +0.6 755,027 + Shewana3_0638 0.84 +0.7 755,097 + Shewana3_0638 0.85 +0.9 755,199 + Shewana3_0638 0.88 +1.0 755,199 + Shewana3_0638 0.88 -2.2 755,199 + Shewana3_0638 0.88 +0.3 755,207 - Shewana3_0638 0.88 +0.5 755,309 + +1.0 755,425 - +0.6 755,513 - -0.6 755,578 - +0.2 755,642 - +0.8 755,695 - -1.1 755,784 - Shewana3_0639 0.23 +0.1 755,935 + Shewana3_0639 0.46 +0.8 756,164 - Shewana3_0639 0.80 +1.0 756,164 - Shewana3_0639 0.80 +0.9 756,242 + +0.8 756,442 + +0.6 756,515 - Shewana3_0640 0.14 -1.2 756,553 + Shewana3_0640 0.18 +0.4 756,558 + Shewana3_0640 0.18 +0.6 756,634 + Shewana3_0640 0.24 +1.3 756,662 - Shewana3_0640 0.27 +0.7 756,727 + Shewana3_0640 0.32 +0.7 756,747 + Shewana3_0640 0.33 -0.6 756,905 - Shewana3_0640 0.46 +1.3 757,034 + Shewana3_0640 0.57 +0.8 757,133 + Shewana3_0640 0.65 -0.6 757,228 + Shewana3_0640 0.73 +0.6 757,255 + Shewana3_0640 0.75 -1.8 757,257 + Shewana3_0640 0.75 -1.3
Or see this region's nucleotide sequence