Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0512 and Shewana3_0513 are separated by 148 nucleotides Shewana3_0513 and Shewana3_0514 are separated by 36 nucleotides Shewana3_0514 and Shewana3_0515 are separated by 164 nucleotides Shewana3_0515 and Shewana3_0516 are separated by 208 nucleotides
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Shewana3_0513: Shewana3_0513 - hypothetical protein (RefSeq), at 603,323 to 603,688
_0513
Shewana3_0514: Shewana3_0514 - hypothetical protein (RefSeq), at 603,725 to 603,928
_0514
Shewana3_0515: Shewana3_0515 - hypothetical protein (RefSeq), at 604,093 to 604,542
_0515
Shewana3_0516: Shewana3_0516 - outer membrane efflux family protein, putative (RefSeq), at 604,751 to 606,121
_0516
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1 at 603.200 kb on + strand at 603.212 kb on + strand at 603.213 kb on + strand at 603.318 kb on + strand at 603.603 kb on + strand, within Shewana3_0513 at 603.603 kb on + strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.611 kb on - strand, within Shewana3_0513 at 603.785 kb on + strand, within Shewana3_0514 at 603.803 kb on + strand, within Shewana3_0514 at 603.867 kb on - strand, within Shewana3_0514 at 604.053 kb on - strand at 604.273 kb on + strand, within Shewana3_0515 at 604.573 kb on - strand at 604.619 kb on + strand at 604.629 kb on + strand at 604.637 kb on - strand at 604.647 kb on + strand at 604.655 kb on - strand at 604.705 kb on + strand at 604.784 kb on + strand at 605.020 kb on - strand, within Shewana3_0516 at 605.097 kb on + strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.105 kb on - strand, within Shewana3_0516 at 605.115 kb on + strand, within Shewana3_0516 at 605.159 kb on - strand, within Shewana3_0516 at 605.224 kb on + strand, within Shewana3_0516 at 605.234 kb on - strand, within Shewana3_0516 at 605.276 kb on - strand, within Shewana3_0516 at 605.295 kb on + strand, within Shewana3_0516 at 605.303 kb on + strand, within Shewana3_0516 at 605.305 kb on + strand, within Shewana3_0516 at 605.311 kb on - strand, within Shewana3_0516 at 605.326 kb on - strand, within Shewana3_0516
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 603,200 + -1.9 603,212 + +1.1 603,213 + +0.7 603,318 + +0.7 603,603 + Shewana3_0513 0.77 +0.9 603,603 + Shewana3_0513 0.77 +0.2 603,611 - Shewana3_0513 0.79 +0.5 603,611 - Shewana3_0513 0.79 +0.4 603,611 - Shewana3_0513 0.79 -0.1 603,785 + Shewana3_0514 0.29 +0.7 603,803 + Shewana3_0514 0.38 +0.4 603,867 - Shewana3_0514 0.70 -1.5 604,053 - +0.2 604,273 + Shewana3_0515 0.40 +1.0 604,573 - +0.0 604,619 + -1.7 604,629 + +0.6 604,637 - +0.3 604,647 + -0.0 604,655 - -1.4 604,705 + +0.4 604,784 + +0.3 605,020 - Shewana3_0516 0.20 +0.7 605,097 + Shewana3_0516 0.25 +0.4 605,105 - Shewana3_0516 0.26 +0.7 605,105 - Shewana3_0516 0.26 +1.2 605,105 - Shewana3_0516 0.26 -1.1 605,105 - Shewana3_0516 0.26 +0.6 605,115 + Shewana3_0516 0.27 +0.3 605,159 - Shewana3_0516 0.30 -0.6 605,224 + Shewana3_0516 0.35 +0.6 605,234 - Shewana3_0516 0.35 -1.1 605,276 - Shewana3_0516 0.38 +0.4 605,295 + Shewana3_0516 0.40 -0.1 605,303 + Shewana3_0516 0.40 +0.0 605,305 + Shewana3_0516 0.40 +0.1 605,311 - Shewana3_0516 0.41 -1.6 605,326 - Shewana3_0516 0.42 -0.1
Or see this region's nucleotide sequence