Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0014

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0184 and Shewana3_R0012 are separated by 234 nucleotidesShewana3_R0012 and Shewana3_R0013 are separated by 7 nucleotidesShewana3_R0013 and Shewana3_R0014 are separated by 35 nucleotidesShewana3_R0014 and Shewana3_R0015 are separated by 9 nucleotidesShewana3_R0015 and Shewana3_0185 are separated by 115 nucleotides Shewana3_0184: Shewana3_0184 - pantothenate kinase (RefSeq), at 223,327 to 224,277 _0184 Shewana3_R0012: Shewana3_R0012 - tRNA-Thr (RefSeq), at 224,512 to 224,587 _R0012 Shewana3_R0013: Shewana3_R0013 - tRNA-Tyr (RefSeq), at 224,595 to 224,679 _R0013 Shewana3_R0014: Shewana3_R0014 - tRNA-Gly (RefSeq), at 224,715 to 224,788 _R0014 Shewana3_R0015: Shewana3_R0015 - tRNA-Thr (RefSeq), at 224,798 to 224,873 _R0015 Shewana3_0185: Shewana3_0185 - elongation factor Tu (RefSeq), at 224,989 to 226,173 _0185 Position (kb) 224 225Strain fitness (log2 ratio) -1 0 1at 224.371 kb on - strandat 224.826 kb on + strand, within Shewana3_R0015

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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224,371 - +0.2
224,826 + Shewana3_R0015 0.37 -1.5

Or see this region's nucleotide sequence