Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0047 and Shewana3_0048 overlap by 26 nucleotides Shewana3_0048 and Shewana3_0049 are separated by 12 nucleotides Shewana3_0049 and Shewana3_0050 are separated by 48 nucleotides
Shewana3_0047: Shewana3_0047 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 56,630 to 57,085
_0047
Shewana3_0048: Shewana3_0048 - protein of unknown function DUF610, YibQ (RefSeq), at 57,060 to 57,815
_0048
Shewana3_0049: Shewana3_0049 - C-terminal processing peptidase-3 (RefSeq), at 57,828 to 59,033
_0049
Shewana3_0050: Shewana3_0050 - peptidase M23B (RefSeq), at 59,082 to 60,215
_0050
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.215 kb on + strand, within Shewana3_0048 at 57.223 kb on - strand, within Shewana3_0048 at 57.283 kb on - strand, within Shewana3_0048 at 57.401 kb on + strand, within Shewana3_0048 at 57.403 kb on - strand, within Shewana3_0048 at 57.431 kb on - strand, within Shewana3_0048 at 57.569 kb on - strand, within Shewana3_0048 at 58.016 kb on - strand, within Shewana3_0049 at 58.089 kb on + strand, within Shewana3_0049 at 58.255 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.540 kb on - strand, within Shewana3_0049 at 58.544 kb on + strand, within Shewana3_0049 at 58.704 kb on + strand, within Shewana3_0049 at 58.979 kb on + strand at 58.979 kb on + strand at 59.136 kb on + strand at 59.136 kb on + strand at 59.301 kb on - strand, within Shewana3_0050 at 59.302 kb on - strand, within Shewana3_0050
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 57,215 + Shewana3_0048 0.21 -1.9 57,223 - Shewana3_0048 0.22 +0.2 57,283 - Shewana3_0048 0.29 +0.2 57,401 + Shewana3_0048 0.45 +0.8 57,403 - Shewana3_0048 0.45 +0.2 57,431 - Shewana3_0048 0.49 +0.7 57,569 - Shewana3_0048 0.67 -0.9 58,016 - Shewana3_0049 0.16 +0.5 58,089 + Shewana3_0049 0.22 +0.1 58,255 + Shewana3_0049 0.35 +0.4 58,376 + Shewana3_0049 0.45 +0.4 58,376 + Shewana3_0049 0.45 -0.1 58,384 - Shewana3_0049 0.46 +0.5 58,384 - Shewana3_0049 0.46 -0.8 58,384 - Shewana3_0049 0.46 +0.2 58,384 - Shewana3_0049 0.46 +1.0 58,540 - Shewana3_0049 0.59 +0.1 58,544 + Shewana3_0049 0.59 +0.2 58,704 + Shewana3_0049 0.73 -1.2 58,979 + +0.3 58,979 + +0.1 59,136 + -1.3 59,136 + +1.1 59,301 - Shewana3_0050 0.19 +2.1 59,302 - Shewana3_0050 0.19 +1.8
Or see this region's nucleotide sequence