Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0025 and Shewana3_0026 are separated by 15 nucleotides Shewana3_0026 and Shewana3_0027 are separated by 77 nucleotides Shewana3_0027 and Shewana3_0028 are separated by 1 nucleotides Shewana3_0028 and Shewana3_0029 are separated by 54 nucleotides
Shewana3_0025: Shewana3_0025 - proline dipeptidase (RefSeq), at 32,031 to 33,350
_0025
Shewana3_0026: Shewana3_0026 - hypothetical protein (RefSeq), at 33,366 to 33,980
_0026
Shewana3_0027: Shewana3_0027 - TrkH family potassium uptake protein (RefSeq), at 34,058 to 35,515
_0027
Shewana3_0028: Shewana3_0028 - protoporphyrinogen oxidase (RefSeq), at 35,517 to 36,041
_0028
Shewana3_0029: Shewana3_0029 - ArsR family transcriptional regulator (RefSeq), at 36,096 to 36,404
_0029
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 33.255 kb on - strand at 33.358 kb on - strand at 33.358 kb on - strand at 33.368 kb on + strand at 33.626 kb on + strand, within Shewana3_0026 at 33.632 kb on - strand, within Shewana3_0026 at 33.738 kb on + strand, within Shewana3_0026 at 33.739 kb on + strand, within Shewana3_0026 at 33.747 kb on - strand, within Shewana3_0026 at 33.948 kb on - strand at 33.985 kb on - strand at 34.249 kb on - strand, within Shewana3_0027 at 34.292 kb on + strand, within Shewana3_0027 at 34.326 kb on + strand, within Shewana3_0027 at 34.426 kb on + strand, within Shewana3_0027 at 34.631 kb on - strand, within Shewana3_0027 at 35.056 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.121 kb on + strand, within Shewana3_0027 at 35.129 kb on - strand, within Shewana3_0027 at 35.136 kb on + strand, within Shewana3_0027 at 35.179 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.196 kb on - strand, within Shewana3_0027 at 35.270 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.276 kb on + strand, within Shewana3_0027 at 35.278 kb on - strand, within Shewana3_0027 at 35.293 kb on + strand, within Shewana3_0027 at 35.319 kb on + strand, within Shewana3_0027 at 35.366 kb on - strand, within Shewana3_0027 at 35.373 kb on + strand at 35.621 kb on - strand, within Shewana3_0028 at 35.631 kb on - strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.640 kb on + strand, within Shewana3_0028 at 35.641 kb on + strand, within Shewana3_0028 at 35.648 kb on - strand, within Shewana3_0028 at 35.649 kb on - strand, within Shewana3_0028 at 35.674 kb on - strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.742 kb on + strand, within Shewana3_0028 at 35.750 kb on - strand, within Shewana3_0028 at 35.853 kb on - strand, within Shewana3_0028 at 35.925 kb on + strand, within Shewana3_0028 at 35.975 kb on - strand, within Shewana3_0028 at 36.060 kb on - strand at 36.060 kb on - strand at 36.078 kb on - strand at 36.092 kb on - strand at 36.115 kb on - strand at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.159 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029 at 36.170 kb on - strand, within Shewana3_0029
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 33,255 - -1.6 33,358 - +0.3 33,358 - -1.1 33,368 + -2.5 33,626 + Shewana3_0026 0.42 -1.4 33,632 - Shewana3_0026 0.43 -0.4 33,738 + Shewana3_0026 0.60 -1.6 33,739 + Shewana3_0026 0.61 -1.7 33,747 - Shewana3_0026 0.62 -1.6 33,948 - +0.1 33,985 - -1.1 34,249 - Shewana3_0027 0.13 -1.6 34,292 + Shewana3_0027 0.16 -2.1 34,326 + Shewana3_0027 0.18 -0.4 34,426 + Shewana3_0027 0.25 -1.3 34,631 - Shewana3_0027 0.39 -1.3 35,056 + Shewana3_0027 0.68 -2.9 35,121 + Shewana3_0027 0.73 -1.4 35,121 + Shewana3_0027 0.73 -1.7 35,129 - Shewana3_0027 0.73 -1.1 35,136 + Shewana3_0027 0.74 -1.2 35,179 - Shewana3_0027 0.77 -1.1 35,196 - Shewana3_0027 0.78 -0.4 35,196 - Shewana3_0027 0.78 -1.5 35,196 - Shewana3_0027 0.78 -0.8 35,270 + Shewana3_0027 0.83 -0.8 35,276 + Shewana3_0027 0.84 -1.4 35,276 + Shewana3_0027 0.84 -1.7 35,278 - Shewana3_0027 0.84 -0.9 35,293 + Shewana3_0027 0.85 -0.9 35,319 + Shewana3_0027 0.86 -1.5 35,366 - Shewana3_0027 0.90 -1.1 35,373 + -2.7 35,621 - Shewana3_0028 0.20 -0.4 35,631 - Shewana3_0028 0.22 -0.1 35,640 + Shewana3_0028 0.23 -1.9 35,640 + Shewana3_0028 0.23 +0.5 35,640 + Shewana3_0028 0.23 -0.6 35,641 + Shewana3_0028 0.24 +0.4 35,648 - Shewana3_0028 0.25 -0.9 35,649 - Shewana3_0028 0.25 -0.0 35,674 - Shewana3_0028 0.30 +0.0 35,742 + Shewana3_0028 0.43 +0.3 35,742 + Shewana3_0028 0.43 -0.4 35,750 - Shewana3_0028 0.44 +0.4 35,853 - Shewana3_0028 0.64 +0.2 35,925 + Shewana3_0028 0.78 -0.4 35,975 - Shewana3_0028 0.87 -1.8 36,060 - -0.7 36,060 - -1.5 36,078 - -1.8 36,092 - +0.3 36,115 - +0.3 36,159 - Shewana3_0029 0.20 -1.1 36,159 - Shewana3_0029 0.20 -1.7 36,159 - Shewana3_0029 0.20 -1.3 36,170 - Shewana3_0029 0.24 -2.3 36,170 - Shewana3_0029 0.24 -2.0
Or see this region's nucleotide sequence