Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4384 and Shewana3_4385 are separated by 11 nucleotides Shewana3_4385 and Shewana3_4386 are separated by 8 nucleotides
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Shewana3_4385: Shewana3_4385 - secretion protein HlyD (RefSeq), at 272,391 to 273,635
_4385
Shewana3_4386: Shewana3_4386 - outer membrane efflux protein (RefSeq), at 273,644 to 274,927
_4386
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 271.502 kb on + strand, within Shewana3_4384 at 271.672 kb on + strand, within Shewana3_4384 at 271.752 kb on + strand, within Shewana3_4384 at 271.839 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.858 kb on - strand, within Shewana3_4384 at 272.019 kb on + strand, within Shewana3_4384 at 272.104 kb on - strand at 272.134 kb on + strand at 272.142 kb on - strand at 272.142 kb on - strand at 272.149 kb on + strand at 272.183 kb on + strand at 272.191 kb on - strand at 272.206 kb on - strand at 272.251 kb on + strand at 272.496 kb on - strand at 272.538 kb on + strand, within Shewana3_4385 at 272.553 kb on - strand, within Shewana3_4385 at 272.633 kb on + strand, within Shewana3_4385 at 272.872 kb on + strand, within Shewana3_4385 at 273.031 kb on - strand, within Shewana3_4385 at 273.485 kb on + strand, within Shewana3_4385 at 273.493 kb on - strand, within Shewana3_4385 at 273.514 kb on + strand at 273.766 kb on + strand at 273.827 kb on + strand, within Shewana3_4386 at 273.858 kb on - strand, within Shewana3_4386 at 273.902 kb on - strand, within Shewana3_4386 at 274.047 kb on + strand, within Shewana3_4386 at 274.048 kb on + strand, within Shewana3_4386 at 274.195 kb on - strand, within Shewana3_4386 at 274.245 kb on + strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.335 kb on + strand, within Shewana3_4386 at 274.343 kb on - strand, within Shewana3_4386 at 274.363 kb on - strand, within Shewana3_4386 at 274.513 kb on - strand, within Shewana3_4386
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 271,502 + Shewana3_4384 0.72 -0.4 271,672 + Shewana3_4384 0.77 -1.0 271,752 + Shewana3_4384 0.80 +0.7 271,839 + Shewana3_4384 0.83 -0.7 271,850 + Shewana3_4384 0.83 -0.0 271,850 + Shewana3_4384 0.83 -0.8 271,858 - Shewana3_4384 0.83 +0.1 272,019 + Shewana3_4384 0.89 -0.3 272,104 - -1.5 272,134 + -0.9 272,142 - -1.2 272,142 - -1.8 272,149 + +0.1 272,183 + -1.5 272,191 - -0.2 272,206 - +0.1 272,251 + +0.4 272,496 - -1.2 272,538 + Shewana3_4385 0.12 +0.6 272,553 - Shewana3_4385 0.13 +1.1 272,633 + Shewana3_4385 0.19 +0.3 272,872 + Shewana3_4385 0.39 -0.3 273,031 - Shewana3_4385 0.51 -0.0 273,485 + Shewana3_4385 0.88 -1.3 273,493 - Shewana3_4385 0.89 +0.2 273,514 + +0.5 273,766 + +0.8 273,827 + Shewana3_4386 0.14 -1.5 273,858 - Shewana3_4386 0.17 -1.3 273,902 - Shewana3_4386 0.20 -0.0 274,047 + Shewana3_4386 0.31 +0.8 274,048 + Shewana3_4386 0.31 +0.2 274,195 - Shewana3_4386 0.43 +0.0 274,245 + Shewana3_4386 0.47 -1.5 274,253 - Shewana3_4386 0.47 -1.1 274,253 - Shewana3_4386 0.47 -1.0 274,335 + Shewana3_4386 0.54 +0.1 274,343 - Shewana3_4386 0.54 -3.0 274,363 - Shewana3_4386 0.56 +0.4 274,513 - Shewana3_4386 0.68 +1.5
Or see this region's nucleotide sequence