Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4381 and Shewana3_4382 are separated by 21 nucleotides Shewana3_4382 and Shewana3_4383 are separated by 19 nucleotides Shewana3_4383 and Shewana3_4384 overlap by 11 nucleotides
Shewana3_4381: Shewana3_4381 - hypothetical protein (RefSeq), at 267,647 to 267,979
_4381
Shewana3_4382: Shewana3_4382 - hypothetical protein (RefSeq), at 268,001 to 268,531
_4382
Shewana3_4383: Shewana3_4383 - hypothetical protein (RefSeq), at 268,551 to 269,246
_4383
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 267.899 kb on - strand, within Shewana3_4381 at 267.916 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.917 kb on + strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.925 kb on - strand, within Shewana3_4381 at 267.935 kb on + strand, within Shewana3_4381 at 267.961 kb on - strand at 267.961 kb on - strand at 268.053 kb on + strand at 268.053 kb on + strand at 268.061 kb on - strand, within Shewana3_4382 at 268.186 kb on - strand, within Shewana3_4382 at 268.205 kb on + strand, within Shewana3_4382 at 268.228 kb on + strand, within Shewana3_4382 at 268.319 kb on - strand, within Shewana3_4382 at 268.336 kb on + strand, within Shewana3_4382 at 268.359 kb on - strand, within Shewana3_4382 at 268.433 kb on - strand, within Shewana3_4382 at 268.567 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.603 kb on - strand at 268.613 kb on - strand at 268.689 kb on - strand, within Shewana3_4383 at 268.790 kb on + strand, within Shewana3_4383 at 268.798 kb on - strand, within Shewana3_4383 at 269.085 kb on - strand, within Shewana3_4383 at 269.226 kb on - strand at 269.391 kb on + strand at 269.399 kb on - strand at 269.463 kb on - strand at 269.477 kb on + strand at 269.550 kb on + strand at 269.740 kb on - strand, within Shewana3_4384 at 269.823 kb on - strand, within Shewana3_4384 at 270.042 kb on + strand, within Shewana3_4384 at 270.127 kb on - strand, within Shewana3_4384 at 270.158 kb on + strand, within Shewana3_4384
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 267,899 - Shewana3_4381 0.76 -0.2 267,916 + Shewana3_4381 0.81 -0.0 267,917 + Shewana3_4381 0.81 +0.1 267,917 + Shewana3_4381 0.81 -0.5 267,917 + Shewana3_4381 0.81 +0.0 267,917 + Shewana3_4381 0.81 -0.7 267,925 - Shewana3_4381 0.83 -0.5 267,925 - Shewana3_4381 0.83 -0.8 267,925 - Shewana3_4381 0.83 -0.9 267,925 - Shewana3_4381 0.83 -0.0 267,925 - Shewana3_4381 0.83 +1.4 267,925 - Shewana3_4381 0.83 -0.8 267,925 - Shewana3_4381 0.83 -1.2 267,925 - Shewana3_4381 0.83 +0.8 267,935 + Shewana3_4381 0.86 +0.1 267,961 - -0.0 267,961 - +0.6 268,053 + +0.2 268,053 + +0.1 268,061 - Shewana3_4382 0.11 +0.5 268,186 - Shewana3_4382 0.35 +0.4 268,205 + Shewana3_4382 0.38 +0.6 268,228 + Shewana3_4382 0.43 +0.5 268,319 - Shewana3_4382 0.60 -0.1 268,336 + Shewana3_4382 0.63 -0.2 268,359 - Shewana3_4382 0.67 +0.3 268,433 - Shewana3_4382 0.81 -0.4 268,567 + -0.0 268,595 + +0.1 268,595 + -1.7 268,595 + -0.4 268,595 + -0.2 268,595 + -1.8 268,595 + -1.1 268,603 - -3.3 268,613 - +0.3 268,689 - Shewana3_4383 0.20 +0.4 268,790 + Shewana3_4383 0.34 +0.5 268,798 - Shewana3_4383 0.35 +0.3 269,085 - Shewana3_4383 0.77 +0.5 269,226 - +0.1 269,391 + -0.5 269,399 - -1.5 269,463 - +0.3 269,477 + -2.9 269,550 + +0.6 269,740 - Shewana3_4384 0.16 +0.5 269,823 - Shewana3_4384 0.19 +0.7 270,042 + Shewana3_4384 0.26 -0.0 270,127 - Shewana3_4384 0.28 +1.5 270,158 + Shewana3_4384 0.29 +0.2
Or see this region's nucleotide sequence