Strain Fitness in Shewanella amazonensis SB2B around Sama_2462

Experiment: LB rep2 t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t2
2,968,245	+		Sama_2459	0.82	+0.8
2,968,290	+		Sama_2459	0.89	+0.7
2,968,420	+				-0.4
2,968,420	+				+1.0
2,968,458	+				+0.6
2,968,458	+				+0.4
2,968,458	+				+1.0
2,968,458	+				+0.1
2,968,459	-				+0.3
2,968,459	-				+1.7
2,968,459	-				-0.9
2,968,499	+				-0.2
2,968,499	+				-0.4
2,968,505	+				-0.2
2,968,846	-		Sama_2461	0.41	-0.0
2,969,007	+		Sama_2461	0.85	-0.7
2,969,007	+		Sama_2461	0.85	-0.6
2,969,051	-				+0.9
2,969,078	+				+1.6
2,969,201	+				+1.1
2,969,202	-				+0.1
2,969,308	-				-0.9
2,969,310	+				-0.7
2,969,310	+				-0.4
2,969,310	+				-0.4
2,969,311	-				-0.9
2,969,311	-				-1.3
2,969,382	+		Sama_2462	0.17	-0.4
2,969,382	+		Sama_2462	0.17	+0.5
2,969,382	+		Sama_2462	0.17	+0.9
2,969,383	-		Sama_2462	0.17	+0.4
2,969,383	-		Sama_2462	0.17	-0.0
2,969,383	-		Sama_2462	0.17	+0.4
2,969,383	-		Sama_2462	0.17	+0.3
2,969,735	+		Sama_2462	0.52	-1.0
2,969,736	+		Sama_2462	0.52	+0.8
2,969,737	-		Sama_2462	0.52	+0.3
2,969,737	-		Sama_2462	0.52	+1.1
2,969,737	-		Sama_2462	0.52	+1.6
2,969,737	-		Sama_2462	0.52	-1.3
2,969,777	+		Sama_2462	0.56	+0.5
2,969,778	-		Sama_2462	0.56	-0.0
2,969,840	+		Sama_2462	0.62	+0.3
2,969,840	+		Sama_2462	0.62	-0.3
2,969,841	-		Sama_2462	0.62	+0.3
2,969,841	-		Sama_2462	0.62	+0.6
2,969,841	-		Sama_2462	0.62	-0.3
2,969,845	+		Sama_2462	0.63	+0.4
2,969,845	+		Sama_2462	0.63	+2.1
2,969,845	+		Sama_2462	0.63	+0.1
2,969,845	+		Sama_2462	0.63	+0.8
2,969,845	+		Sama_2462	0.63	-0.5
2,969,845	+		Sama_2462	0.63	+0.2
2,969,845	+		Sama_2462	0.63	-0.6
2,969,845	+		Sama_2462	0.63	+1.1
2,969,845	+		Sama_2462	0.63	+1.9
2,969,846	-		Sama_2462	0.63	-0.4
2,969,846	-		Sama_2462	0.63	+1.3
2,969,846	-		Sama_2462	0.63	-0.0
2,969,846	-		Sama_2462	0.63	+0.1
2,969,846	-		Sama_2462	0.63	-1.9
2,969,846	-		Sama_2462	0.63	+1.1
2,969,846	-		Sama_2462	0.63	+0.2
2,969,846	-		Sama_2462	0.63	-0.2
2,969,846	-		Sama_2462	0.63	-0.3
2,969,846	-		Sama_2462	0.63	+0.1
2,969,846	-		Sama_2462	0.63	+0.9
2,969,846	-		Sama_2462	0.63	+0.6
2,969,872	+		Sama_2462	0.65	+0.3
2,969,873	-		Sama_2462	0.65	-1.0
2,969,873	-		Sama_2462	0.65	+0.4
2,969,873	-		Sama_2462	0.65	+0.6
2,969,911	+		Sama_2462	0.69	+0.1
2,969,991	+		Sama_2462	0.77	+0.6
2,969,991	+		Sama_2462	0.77	+0.1
2,969,991	+		Sama_2462	0.77	-0.4
2,969,991	+		Sama_2462	0.77	+1.0
2,969,991	+		Sama_2462	0.77	+3.0
2,969,991	+		Sama_2462	0.77	+1.6
2,969,991	+		Sama_2462	0.77	+0.1
2,969,991	+		Sama_2462	0.77	-1.3
2,969,991	+		Sama_2462	0.77	-0.4
2,969,991	+		Sama_2462	0.77	-1.2
2,969,992	-		Sama_2462	0.77	+1.1
2,969,992	-		Sama_2462	0.77	+0.4
2,969,992	-		Sama_2462	0.77	-0.7
2,969,992	-		Sama_2462	0.77	+0.1
2,969,992	-		Sama_2462	0.77	+0.5
2,969,992	-		Sama_2462	0.77	+0.4
2,969,992	-		Sama_2462	0.77	+0.9
2,969,992	-		Sama_2462	0.77	-0.2
2,969,992	-		Sama_2462	0.77	-0.4
2,969,993	+		Sama_2462	0.77	+2.0
2,969,993	+		Sama_2462	0.77	+1.6
2,969,993	+		Sama_2462	0.77	-0.4
2,969,993	+		Sama_2462	0.77	+0.1
2,969,993	+		Sama_2462	0.77	+0.3
2,969,993	+		Sama_2462	0.77	-1.0
2,969,993	+		Sama_2462	0.77	+0.6
2,969,994	-		Sama_2462	0.77	+2.0
2,969,994	-		Sama_2462	0.77	-0.7
2,969,994	-		Sama_2462	0.77	-0.3
2,969,994	-		Sama_2462	0.77	-1.4
2,969,994	-		Sama_2462	0.77	+0.4
2,969,994	-		Sama_2462	0.77	+0.6
2,969,994	-		Sama_2462	0.77	+1.9
2,969,994	-		Sama_2462	0.77	-1.4
2,969,994	-		Sama_2462	0.77	-0.0
2,969,994	-		Sama_2462	0.77	-0.0
2,969,994	-		Sama_2462	0.77	+0.6
2,969,994	-		Sama_2462	0.77	-0.4
2,969,994	-		Sama_2462	0.77	-0.4
2,970,117	+		Sama_2462	0.90	-0.4
2,970,131	+				-0.4
2,970,131	+				+1.4
2,970,131	+				+0.1
2,970,132	-				+0.0
2,970,132	-				-0.9
2,970,132	-				-0.4
2,970,199	-				+0.6
2,970,225	+				-0.9
2,970,226	-				-1.1
2,970,238	+				+0.4
2,970,239	-				-0.6
2,970,241	+				+1.6
2,970,241	+				-0.4
2,970,241	+				-1.2
2,970,241	+				+0.1
2,970,242	-				+0.4
2,970,242	-				-0.2
2,970,242	-				-0.6
2,970,242	-				-0.0
2,970,244	+				+0.9
2,970,244	+				-1.4
2,970,244	+				+0.6
2,970,244	+				+0.0
2,970,244	+				+0.4
2,970,244	+				+0.7
2,970,244	+				+1.7
2,970,244	+				+0.1
2,970,245	-				-0.0
2,970,245	-				+0.6
2,970,245	-				+1.1
2,970,245	-				-0.9
2,970,245	-				+2.6
2,970,245	-				+0.3
2,970,245	-				+0.4
2,970,245	-				-1.8
2,970,245	-				+1.9
2,970,245	-				-1.8
2,970,273	+				-0.2
2,970,273	+				+0.3
2,970,273	+				+0.1
2,970,273	+				+0.2
2,970,274	-				+0.6
2,970,274	-				+0.2
2,970,352	-				-0.7
2,970,369	-				+0.1
2,970,369	-				-1.2
2,970,391	-				+0.9
2,970,391	-				-1.2
2,970,395	-				-0.2
2,970,395	-				+0.4
2,970,424	+				-1.4
2,970,424	+				+1.1
2,970,430	-				+0.3
2,970,452	+				-0.4
2,970,453	-				+0.1
2,970,475	+				+0.7
2,970,588	-		Sama_2463	0.22	-0.4
2,970,603	+		Sama_2463	0.25	-0.4
2,970,603	+		Sama_2463	0.25	+0.7
2,970,633	+		Sama_2463	0.29	+0.7
2,970,633	+		Sama_2463	0.29	+0.6
2,970,634	-		Sama_2463	0.30	-0.2
2,970,634	-		Sama_2463	0.30	+0.7
2,970,670	+		Sama_2463	0.35	+1.1
2,970,671	-		Sama_2463	0.36	+1.1
2,970,674	+		Sama_2463	0.36	-0.4
2,970,675	-		Sama_2463	0.36	-0.3
2,970,693	+		Sama_2463	0.39	+0.9
2,970,693	+		Sama_2463	0.39	+0.6
2,970,693	+		Sama_2463	0.39	+0.6
2,970,706	+		Sama_2463	0.41	+0.1
2,970,706	+		Sama_2463	0.41	+0.6
2,970,706	+		Sama_2463	0.41	-1.3
2,970,904	+		Sama_2463	0.74	-0.9
2,970,904	+		Sama_2463	0.74	-2.8
2,970,904	+		Sama_2463	0.74	+0.1
2,970,904	+		Sama_2463	0.74	-0.1
2,970,904	+		Sama_2463	0.74	+0.2
2,970,904	+		Sama_2463	0.74	+1.3
2,970,904	+		Sama_2463	0.74	+1.1
2,970,905	-		Sama_2463	0.74	+1.5
2,970,905	-		Sama_2463	0.74	-0.6
2,970,905	-		Sama_2463	0.74	-0.0
2,970,905	-		Sama_2463	0.74	+1.5
2,970,905	-		Sama_2463	0.74	+1.9
2,970,905	-		Sama_2463	0.74	-0.1
2,970,905	-		Sama_2463	0.74	-0.4
2,970,905	-		Sama_2463	0.74	-0.4
2,970,921	+		Sama_2463	0.76	-0.6
2,970,922	-		Sama_2463	0.77	+2.0
2,970,998	+		Sama_2463	0.89	+1.1
2,970,998	+		Sama_2463	0.89	+0.9
2,970,998	+		Sama_2463	0.89	-0.2
2,970,998	+		Sama_2463	0.89	+0.6
2,970,998	+		Sama_2463	0.89	+0.9
2,970,999	-		Sama_2463	0.89	+1.3
2,970,999	-		Sama_2463	0.89	+0.4
2,970,999	-		Sama_2463	0.89	-2.0
2,970,999	-		Sama_2463	0.89	+0.4
2,970,999	-		Sama_2463	0.89	+2.1
2,970,999	-		Sama_2463	0.89	+0.4
2,971,037	+				-2.4
2,971,038	-				-1.4
2,971,038	-				-2.4
2,971,038	-				+1.1
2,971,042	-				-0.4
2,971,073	+				+1.0
2,971,073	+				-1.0
2,971,146	+				+0.6
2,971,147	-				-0.4
2,971,147	-				-0.8
2,971,186	-		Sama_2464	0.14	+2.4
2,971,186	-		Sama_2464	0.14	+0.1
2,971,186	-		Sama_2464	0.14	+1.3
2,971,190	+		Sama_2464	0.15	+1.1
2,971,191	-		Sama_2464	0.15	+0.9
2,971,219	+		Sama_2464	0.20	-0.7
2,971,220	-		Sama_2464	0.20	+0.4
2,971,220	-		Sama_2464	0.20	-0.2