Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3625 and Shew_3626 are separated by 302 nucleotides Shew_3626 and Shew_3627 overlap by 4 nucleotides Shew_3627 and Shew_3628 are separated by 156 nucleotides Shew_3628 and Shew_3629 overlap by 7 nucleotides
Shew_3625: Shew_3625 - sodium:dicarboxylate symporter (RefSeq), at 4,324,508 to 4,325,734
_3625
Shew_3626: Shew_3626 - hypothetical protein (RefSeq), at 4,326,037 to 4,326,462
_3626
Shew_3627: Shew_3627 - XRE family transcriptional regulator (RefSeq), at 4,326,459 to 4,326,656
_3627
Shew_3628: Shew_3628 - MgtC/SapB transporter (RefSeq), at 4,326,813 to 4,327,295
_3628
Shew_3629: Shew_3629 - competence protein ComF (RefSeq), at 4,327,289 to 4,328,047
_3629
Position (kb) 4326
4327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4325.804 kb on - strand at 4325.918 kb on - strand at 4326.070 kb on - strand at 4326.121 kb on - strand, within Shew_3626 at 4326.163 kb on + strand, within Shew_3626 at 4326.266 kb on + strand, within Shew_3626 at 4326.651 kb on + strand at 4326.917 kb on - strand, within Shew_3628 at 4326.969 kb on - strand, within Shew_3628 at 4327.073 kb on + strand, within Shew_3628 at 4327.525 kb on + strand, within Shew_3629
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,325,804 - +0.1 4,325,918 - -2.4 4,326,070 - +1.4 4,326,121 - Shew_3626 0.20 +2.4 4,326,163 + Shew_3626 0.30 +1.0 4,326,266 + Shew_3626 0.54 +0.2 4,326,651 + +1.2 4,326,917 - Shew_3628 0.22 -0.2 4,326,969 - Shew_3628 0.32 +0.0 4,327,073 + Shew_3628 0.54 -4.4 4,327,525 + Shew_3629 0.31 +0.1
Or see this region's nucleotide sequence