Strain Fitness in Shewanella loihica PV-4 around Shew_3255

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3253 and Shew_3254 are separated by 162 nucleotidesShew_3254 and Shew_3255 are separated by 51 nucleotidesShew_3255 and Shew_3256 are separated by 32 nucleotidesShew_3256 and Shew_3257 overlap by 4 nucleotides Shew_3253: Shew_3253 - hypothetical protein (RefSeq), at 3,891,249 to 3,891,512 _3253 Shew_3254: Shew_3254 - cytochrome c family protein (RefSeq), at 3,891,675 to 3,892,235 _3254 Shew_3255: Shew_3255 - hypothetical protein (RefSeq), at 3,892,287 to 3,892,760 _3255 Shew_3256: Shew_3256 - copper resistance B precursor (RefSeq), at 3,892,793 to 3,893,749 _3256 Shew_3257: Shew_3257 - CopA family copper resistance protein (RefSeq), at 3,893,746 to 3,895,491 _3257 Position (kb) 3892 3893Strain fitness (log2 ratio) -2 -1 0 1at 3891.565 kb on + strandat 3892.314 kb on - strandat 3892.694 kb on + strand, within Shew_3255at 3892.909 kb on - strand, within Shew_3256at 3892.961 kb on + strand, within Shew_3256at 3893.027 kb on - strand, within Shew_3256at 3893.069 kb on - strand, within Shew_3256at 3893.182 kb on - strand, within Shew_3256

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
3,891,565 + +1.5
3,892,314 - -1.4
3,892,694 + Shew_3255 0.86 -2.7
3,892,909 - Shew_3256 0.12 +0.5
3,892,961 + Shew_3256 0.18 -2.1
3,893,027 - Shew_3256 0.24 -2.3
3,893,069 - Shew_3256 0.29 -0.1
3,893,182 - Shew_3256 0.41 -0.1

Or see this region's nucleotide sequence