Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3253 and Shew_3254 are separated by 162 nucleotides Shew_3254 and Shew_3255 are separated by 51 nucleotides Shew_3255 and Shew_3256 are separated by 32 nucleotides Shew_3256 and Shew_3257 overlap by 4 nucleotides
Shew_3253: Shew_3253 - hypothetical protein (RefSeq), at 3,891,249 to 3,891,512
_3253
Shew_3254: Shew_3254 - cytochrome c family protein (RefSeq), at 3,891,675 to 3,892,235
_3254
Shew_3255: Shew_3255 - hypothetical protein (RefSeq), at 3,892,287 to 3,892,760
_3255
Shew_3256: Shew_3256 - copper resistance B precursor (RefSeq), at 3,892,793 to 3,893,749
_3256
Shew_3257: Shew_3257 - CopA family copper resistance protein (RefSeq), at 3,893,746 to 3,895,491
_3257
Position (kb)
3892
3893 Strain fitness (log2 ratio)
-2
-1
0
1 at 3891.565 kb on + strand at 3892.314 kb on - strand at 3892.694 kb on + strand, within Shew_3255 at 3892.909 kb on - strand, within Shew_3256 at 3892.961 kb on + strand, within Shew_3256 at 3893.027 kb on - strand, within Shew_3256 at 3893.069 kb on - strand, within Shew_3256 at 3893.182 kb on - strand, within Shew_3256
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 3,891,565 + +1.5 3,892,314 - -1.4 3,892,694 + Shew_3255 0.86 -2.7 3,892,909 - Shew_3256 0.12 +0.5 3,892,961 + Shew_3256 0.18 -2.1 3,893,027 - Shew_3256 0.24 -2.3 3,893,069 - Shew_3256 0.29 -0.1 3,893,182 - Shew_3256 0.41 -0.1
Or see this region's nucleotide sequence