Strain Fitness in Shewanella loihica PV-4 around Shew_2434

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2432 and Shew_2433 are separated by 84 nucleotidesShew_2433 and Shew_2434 overlap by 8 nucleotidesShew_2434 and Shew_2435 are separated by 386 nucleotides Shew_2432: Shew_2432 - hypothetical protein (RefSeq), at 2,858,632 to 2,860,272 _2432 Shew_2433: Shew_2433 - RNA polymerase sigma factor (RefSeq), at 2,860,357 to 2,860,920 _2433 Shew_2434: Shew_2434 - hypothetical protein (RefSeq), at 2,860,913 to 2,861,617 _2434 Shew_2435: Shew_2435 - sodium/proline symporter (RefSeq), at 2,862,004 to 2,863,455 _2435 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2860.113 kb on - strandat 2860.120 kb on - strandat 2861.144 kb on + strand, within Shew_2434at 2861.321 kb on + strand, within Shew_2434at 2861.573 kb on + strandat 2861.581 kb on - strandat 2861.639 kb on + strandat 2861.959 kb on - strandat 2861.989 kb on - strandat 2862.456 kb on - strand, within Shew_2435at 2862.520 kb on + strand, within Shew_2435at 2862.520 kb on + strand, within Shew_2435

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,860,113 - -2.0
2,860,120 - +0.0
2,861,144 + Shew_2434 0.33 -6.0
2,861,321 + Shew_2434 0.58 -2.6
2,861,573 + -0.1
2,861,581 - +0.0
2,861,639 + -0.9
2,861,959 - +0.7
2,861,989 - +0.3
2,862,456 - Shew_2435 0.31 +0.1
2,862,520 + Shew_2435 0.36 +0.3
2,862,520 + Shew_2435 0.36 +0.3

Or see this region's nucleotide sequence