Strain Fitness in Shewanella loihica PV-4 around Shew_2416

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2415 and Shew_2416 are separated by 186 nucleotidesShew_2416 and Shew_2417 are separated by 131 nucleotides Shew_2415: Shew_2415 - major facilitator transporter (RefSeq), at 2,835,052 to 2,836,260 _2415 Shew_2416: Shew_2416 - chorismate synthase (RefSeq), at 2,836,447 to 2,837,541 _2416 Shew_2417: Shew_2417 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 2,837,673 to 2,838,617 _2417 Position (kb) 2836 2837 2838Strain fitness (log2 ratio) -3 -2 -1 0 1at 2836.173 kb on + strandat 2837.093 kb on - strand, within Shew_2416at 2837.372 kb on + strand, within Shew_2416at 2837.478 kb on - strandat 2838.019 kb on + strand, within Shew_2417at 2838.468 kb on + strand, within Shew_2417at 2838.476 kb on - strand, within Shew_2417

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,836,173 + +0.8
2,837,093 - Shew_2416 0.59 -3.7
2,837,372 + Shew_2416 0.84 -1.8
2,837,478 - -2.3
2,838,019 + Shew_2417 0.37 +0.1
2,838,468 + Shew_2417 0.84 +1.0
2,838,476 - Shew_2417 0.85 -0.0

Or see this region's nucleotide sequence