Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2364 and Shew_2365 are separated by 106 nucleotides Shew_2365 and Shew_2366 are separated by 99 nucleotides Shew_2366 and Shew_2367 are separated by 102 nucleotides Shew_2367 and Shew_2368 are separated by 138 nucleotides
Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522
_2364
Shew_2365: Shew_2365 - GntR family transcriptional regulator (RefSeq), at 2,766,629 to 2,767,300
_2365
Shew_2366: Shew_2366 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,767,400 to 2,768,467
_2366
Shew_2367: Shew_2367 - hypothetical protein (RefSeq), at 2,768,570 to 2,769,160
_2367
Shew_2368: Shew_2368 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 2,769,299 to 2,769,979
_2368
Position (kb)
2767
2768
2769 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2766.504 kb on - strand at 2766.783 kb on + strand, within Shew_2365 at 2767.485 kb on + strand at 2767.776 kb on - strand, within Shew_2366 at 2768.041 kb on - strand, within Shew_2366 at 2768.565 kb on - strand at 2768.668 kb on + strand, within Shew_2367 at 2768.880 kb on - strand, within Shew_2367 at 2768.994 kb on + strand, within Shew_2367 at 2769.181 kb on + strand at 2769.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,766,504 - +0.0 2,766,783 + Shew_2365 0.23 -5.7 2,767,485 + +0.6 2,767,776 - Shew_2366 0.35 +0.7 2,768,041 - Shew_2366 0.60 -0.0 2,768,565 - -0.8 2,768,668 + Shew_2367 0.17 +0.4 2,768,880 - Shew_2367 0.52 -2.7 2,768,994 + Shew_2367 0.72 +1.0 2,769,181 + -1.4 2,769,189 - -0.1
Or see this region's nucleotide sequence