Strain Fitness in Shewanella loihica PV-4 around Shew_2365

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2364 and Shew_2365 are separated by 106 nucleotidesShew_2365 and Shew_2366 are separated by 99 nucleotides Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522 _2364 Shew_2365: Shew_2365 - GntR family transcriptional regulator (RefSeq), at 2,766,629 to 2,767,300 _2365 Shew_2366: Shew_2366 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,767,400 to 2,768,467 _2366 Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2765.630 kb on - strand, within Shew_2364at 2765.868 kb on + strand, within Shew_2364at 2765.871 kb on - strand, within Shew_2364at 2765.986 kb on - strand, within Shew_2364at 2766.051 kb on - strand, within Shew_2364at 2766.054 kb on + strand, within Shew_2364at 2766.054 kb on + strand, within Shew_2364at 2766.290 kb on + strand, within Shew_2364at 2766.298 kb on - strand, within Shew_2364at 2766.303 kb on - strand, within Shew_2364at 2766.504 kb on - strandat 2766.783 kb on + strand, within Shew_2365at 2767.485 kb on + strandat 2767.776 kb on - strand, within Shew_2366at 2768.041 kb on - strand, within Shew_2366

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,765,630 - Shew_2364 0.43 +0.3
2,765,868 + Shew_2364 0.58 -2.5
2,765,871 - Shew_2364 0.58 -0.0
2,765,986 - Shew_2364 0.66 +0.2
2,766,051 - Shew_2364 0.70 -0.6
2,766,054 + Shew_2364 0.70 +0.7
2,766,054 + Shew_2364 0.70 +0.7
2,766,290 + Shew_2364 0.85 +0.5
2,766,298 - Shew_2364 0.86 -4.6
2,766,303 - Shew_2364 0.86 -1.4
2,766,504 - +0.0
2,766,783 + Shew_2365 0.23 -5.7
2,767,485 + +0.6
2,767,776 - Shew_2366 0.35 +0.7
2,768,041 - Shew_2366 0.60 -0.0

Or see this region's nucleotide sequence