Strain Fitness in Shewanella loihica PV-4 around Shew_2113

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2111 and Shew_2112 are separated by 68 nucleotidesShew_2112 and Shew_2113 are separated by 44 nucleotidesShew_2113 and Shew_2114 are separated by 137 nucleotides Shew_2111: Shew_2111 - DNA polymerase III, epsilon subunit (RefSeq), at 2,446,949 to 2,447,677 _2111 Shew_2112: Shew_2112 - ribonuclease H (RefSeq), at 2,447,746 to 2,448,222 _2112 Shew_2113: Shew_2113 - hypothetical protein (RefSeq), at 2,448,267 to 2,448,989 _2113 Shew_2114: Shew_2114 - hydroxyacylglutathione hydrolase (RefSeq), at 2,449,127 to 2,449,909 _2114 Position (kb) 2448 2449Strain fitness (log2 ratio) -1 0 1 2at 2448.118 kb on - strand, within Shew_2112at 2448.274 kb on + strandat 2448.985 kb on - strandat 2449.243 kb on - strand, within Shew_2114at 2449.411 kb on + strand, within Shew_2114at 2449.484 kb on - strand, within Shew_2114at 2449.484 kb on - strand, within Shew_2114at 2449.529 kb on - strand, within Shew_2114at 2449.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,448,118 - Shew_2112 0.78 -0.4
2,448,274 + +0.3
2,448,985 - -0.3
2,449,243 - Shew_2114 0.15 +2.3
2,449,411 + Shew_2114 0.36 -0.5
2,449,484 - Shew_2114 0.46 -0.4
2,449,484 - Shew_2114 0.46 +1.2
2,449,529 - Shew_2114 0.51 +0.7
2,449,959 - +0.6

Or see this region's nucleotide sequence