Strain Fitness in Shewanella loihica PV-4 around Shew_2022

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2020 and Shew_2021 are separated by 19 nucleotidesShew_2021 and Shew_2022 overlap by 8 nucleotidesShew_2022 and Shew_2023 are separated by 58 nucleotidesShew_2023 and Shew_2024 are separated by 157 nucleotides Shew_2020: Shew_2020 - seryl-tRNA synthetase (RefSeq), at 2,332,809 to 2,334,095 _2020 Shew_2021: Shew_2021 - CrcB protein (RefSeq), at 2,334,115 to 2,334,489 _2021 Shew_2022: Shew_2022 - recombination factor protein RarA (RefSeq), at 2,334,482 to 2,335,813 _2022 Shew_2023: Shew_2023 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 2,335,872 to 2,336,498 _2023 Shew_2024: Shew_2024 - cell divisionFtsK/SpoIIIE (RefSeq), at 2,336,656 to 2,339,181 _2024 Position (kb) 2334 2335 2336Strain fitness (log2 ratio) -2 -1 0 1at 2334.502 kb on + strandat 2335.197 kb on + strand, within Shew_2022at 2336.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,334,502 + +1.2
2,335,197 + Shew_2022 0.54 -2.3
2,336,604 - -1.3

Or see this region's nucleotide sequence