Strain Fitness in Shewanella loihica PV-4 around Shew_1927

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1925 and Shew_1926 are separated by 3 nucleotidesShew_1926 and Shew_1927 are separated by 11 nucleotidesShew_1927 and Shew_1928 are separated by 119 nucleotides Shew_1925: Shew_1925 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq), at 2,222,531 to 2,223,709 _1925 Shew_1926: Shew_1926 - transketolase, central region (RefSeq), at 2,223,713 to 2,224,690 _1926 Shew_1927: Shew_1927 - dihydrolipoamide acetyltransferase (RefSeq), at 2,224,702 to 2,226,264 _1927 Shew_1928: Shew_1928 - quinolinate synthetase (RefSeq), at 2,226,384 to 2,227,451 _1928 Position (kb) 2224 2225 2226 2227Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2223.831 kb on - strand, within Shew_1926at 2223.842 kb on - strand, within Shew_1926at 2224.075 kb on - strand, within Shew_1926at 2225.954 kb on - strand, within Shew_1927at 2225.993 kb on - strand, within Shew_1927at 2226.067 kb on - strand, within Shew_1927

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,223,831 - Shew_1926 0.12 -4.0
2,223,842 - Shew_1926 0.13 -2.0
2,224,075 - Shew_1926 0.37 -2.5
2,225,954 - Shew_1927 0.80 -3.0
2,225,993 - Shew_1927 0.83 -2.9
2,226,067 - Shew_1927 0.87 -1.0

Or see this region's nucleotide sequence