Strain Fitness in Shewanella loihica PV-4 around Shew_1836

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1834 and Shew_1835 are separated by 231 nucleotidesShew_1835 and Shew_1836 are separated by 119 nucleotidesShew_1836 and Shew_1837 are separated by 197 nucleotides Shew_1834: Shew_1834 - superoxide dismutase (RefSeq), at 2,111,512 to 2,112,096 _1834 Shew_1835: Shew_1835 - glutaredoxin-like protein (RefSeq), at 2,112,328 to 2,112,678 _1835 Shew_1836: Shew_1836 - uracil-xanthine permease (RefSeq), at 2,112,798 to 2,114,033 _1836 Shew_1837: Shew_1837 - hypothetical protein (RefSeq), at 2,114,231 to 2,115,361 _1837 Position (kb) 2112 2113 2114 2115Strain fitness (log2 ratio) -1 0 1at 2112.157 kb on - strandat 2112.675 kb on - strandat 2112.980 kb on - strand, within Shew_1836at 2113.161 kb on + strand, within Shew_1836at 2113.549 kb on - strand, within Shew_1836at 2113.796 kb on - strand, within Shew_1836at 2114.457 kb on - strand, within Shew_1837

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,112,157 - +0.2
2,112,675 - -1.1
2,112,980 - Shew_1836 0.15 +1.4
2,113,161 + Shew_1836 0.29 +0.5
2,113,549 - Shew_1836 0.61 +1.0
2,113,796 - Shew_1836 0.81 +0.6
2,114,457 - Shew_1837 0.20 +0.3

Or see this region's nucleotide sequence