Strain Fitness in Shewanella loihica PV-4 around Shew_1789

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1787 and Shew_1788 are separated by 67 nucleotidesShew_1788 and Shew_1789 are separated by 179 nucleotidesShew_1789 and Shew_1790 are separated by 103 nucleotides Shew_1787: Shew_1787 - putative chaperone (RefSeq), at 2,044,776 to 2,046,161 _1787 Shew_1788: Shew_1788 - CreA family protein (RefSeq), at 2,046,229 to 2,046,726 _1788 Shew_1789: Shew_1789 - cystathionine beta-lyase (RefSeq), at 2,046,906 to 2,048,093 _1789 Shew_1790: Shew_1790 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,048,197 to 2,050,368 _1790 Position (kb) 2046 2047 2048 2049Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2045.915 kb on - strand, within Shew_1787at 2046.071 kb on + strandat 2047.124 kb on - strand, within Shew_1789at 2048.247 kb on - strandat 2048.792 kb on - strand, within Shew_1790at 2048.949 kb on + strand, within Shew_1790

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,045,915 - Shew_1787 0.82 -1.6
2,046,071 + -1.4
2,047,124 - Shew_1789 0.18 -4.6
2,048,247 - -2.1
2,048,792 - Shew_1790 0.27 -0.2
2,048,949 + Shew_1790 0.35 -0.6

Or see this region's nucleotide sequence