Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1660 and fur are separated by 90 nucleotides fur and Shew_1662 are separated by 310 nucleotides Shew_1662 and Shew_1663 are separated by 57 nucleotides Shew_1663 and Shew_1664 are separated by 40 nucleotides
Shew_1660: Shew_1660 - GCN5-related N-acetyltransferase (RefSeq), at 1,910,434 to 1,910,934
_1660
Shew_1661: fur - ferric uptake regulator (RefSeq), at 1,911,025 to 1,911,456
fur
Shew_1662: Shew_1662 - NAD-dependent deacetylase (RefSeq), at 1,911,767 to 1,912,513
_1662
Shew_1663: Shew_1663 - hypothetical protein (RefSeq), at 1,912,571 to 1,913,092
_1663
Shew_1664: Shew_1664 - hypothetical protein (RefSeq), at 1,913,133 to 1,913,420
_1664
Position (kb) 1911
1912
1913 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1910.926 kb on + strand at 1911.080 kb on - strand, within fur at 1912.172 kb on - strand, within Shew_1662 at 1912.967 kb on - strand, within Shew_1663 at 1912.967 kb on - strand, within Shew_1663 at 1913.052 kb on + strand at 1913.086 kb on + strand at 1913.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,910,926 + +1.0 1,911,080 - fur Shew_1661 0.13 -2.0 1,912,172 - Shew_1662 0.54 -4.1 1,912,967 - Shew_1663 0.76 -1.2 1,912,967 - Shew_1663 0.76 -0.4 1,913,052 + -1.2 1,913,086 + +1.3 1,913,086 + +0.3
Or see this region's nucleotide sequence