Strain Fitness in Shewanella loihica PV-4 around Shew_1656

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkgd and Shew_1656 are separated by 32 nucleotidesShew_1656 and sucC are separated by 103 nucleotides Shew_1655: kgd - alpha-ketoglutarate decarboxylase (RefSeq), at 1,902,267 to 1,905,089 kgd Shew_1656: Shew_1656 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase (RefSeq), at 1,905,122 to 1,906,312 _1656 Shew_1657: sucC - succinyl-CoA synthetase subunit beta (RefSeq), at 1,906,416 to 1,907,582 sucC Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -1 0 1 2at 1907.247 kb on - strand, within sucC

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,907,247 - sucC Shew_1657 0.71 +2.7

Or see this region's nucleotide sequence