Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1245 and Shew_1246 are separated by 138 nucleotides Shew_1246 and Shew_1247 are separated by 1 nucleotides Shew_1247 and Shew_1248 are separated by 9 nucleotides Shew_1248 and Shew_1249 overlap by 1 nucleotides
Shew_1245: Shew_1245 - LysR family transcriptional regulator (RefSeq), at 1,443,918 to 1,444,859
_1245
Shew_1246: Shew_1246 - hypothetical protein (RefSeq), at 1,444,998 to 1,445,246
_1246
Shew_1247: Shew_1247 - hypothetical protein (RefSeq), at 1,445,248 to 1,446,180
_1247
Shew_1248: Shew_1248 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 1,446,190 to 1,446,672
_1248
Shew_1249: Shew_1249 - phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq), at 1,446,672 to 1,447,769
_1249
Position (kb) 1445
1446
1447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1444.692 kb on - strand, within Shew_1245 at 1444.692 kb on - strand, within Shew_1245 at 1444.740 kb on + strand, within Shew_1245 at 1445.214 kb on - strand, within Shew_1246 at 1445.296 kb on + strand at 1445.507 kb on - strand, within Shew_1247 at 1445.615 kb on - strand, within Shew_1247 at 1445.780 kb on - strand, within Shew_1247 at 1445.820 kb on + strand, within Shew_1247 at 1447.104 kb on + strand, within Shew_1249
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,444,692 - Shew_1245 0.82 -3.0 1,444,692 - Shew_1245 0.82 -2.6 1,444,740 + Shew_1245 0.87 -1.6 1,445,214 - Shew_1246 0.87 -2.5 1,445,296 + -2.6 1,445,507 - Shew_1247 0.28 -2.8 1,445,615 - Shew_1247 0.39 -3.0 1,445,780 - Shew_1247 0.57 -0.1 1,445,820 + Shew_1247 0.61 -3.5 1,447,104 + Shew_1249 0.39 -0.4
Or see this region's nucleotide sequence