Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1146 and Shew_1147 are separated by 173 nucleotides Shew_1147 and Shew_1148 are separated by 260 nucleotides Shew_1148 and Shew_1149 are separated by 148 nucleotides
Shew_1146: Shew_1146 - hypothetical protein (RefSeq), at 1,321,638 to 1,321,952
_1146
Shew_1147: Shew_1147 - hypothetical protein (RefSeq), at 1,322,126 to 1,322,689
_1147
Shew_1148: Shew_1148 - hypothetical protein (RefSeq), at 1,322,950 to 1,323,399
_1148
Shew_1149: Shew_1149 - LysR family transcriptional regulator (RefSeq), at 1,323,548 to 1,324,423
_1149
Position (kb) 1322
1323
1324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1322.060 kb on + strand at 1322.324 kb on + strand, within Shew_1147 at 1322.470 kb on - strand, within Shew_1147 at 1322.607 kb on + strand, within Shew_1147 at 1322.615 kb on - strand, within Shew_1147 at 1322.956 kb on - strand at 1323.270 kb on + strand, within Shew_1148 at 1323.286 kb on + strand, within Shew_1148 at 1323.622 kb on + strand at 1323.901 kb on + strand, within Shew_1149 at 1323.909 kb on - strand, within Shew_1149
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,322,060 + -0.1 1,322,324 + Shew_1147 0.35 -0.4 1,322,470 - Shew_1147 0.61 +0.6 1,322,607 + Shew_1147 0.85 -2.3 1,322,615 - Shew_1147 0.87 +0.9 1,322,956 - -2.4 1,323,270 + Shew_1148 0.71 -3.2 1,323,286 + Shew_1148 0.75 -2.9 1,323,622 + +0.4 1,323,901 + Shew_1149 0.40 +0.6 1,323,909 - Shew_1149 0.41 -1.4
Or see this region's nucleotide sequence