Strain Fitness in Shewanella loihica PV-4 around Shew_1107

Experiment: acetate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate (C)
1,276,531	-		Shew_1106	0.72	+2.9
1,276,531	-		Shew_1106	0.72	+0.9
1,276,561	+		Shew_1106	0.73	+1.1
1,276,561	+		Shew_1106	0.73	+0.9
1,276,564	-		Shew_1106	0.73	+1.7
1,276,569	-		Shew_1106	0.73	+0.7
1,276,569	-		Shew_1106	0.73	+0.2
1,276,576	-		Shew_1106	0.73	+1.3
1,276,576	-		Shew_1106	0.73	+1.2
1,276,583	-		Shew_1106	0.73	-1.1
1,276,643	+		Shew_1106	0.75	-0.7
1,276,651	-		Shew_1106	0.75	+0.5
1,276,651	-		Shew_1106	0.75	+2.5
1,276,651	-		Shew_1106	0.75	+0.2
1,276,651	-		Shew_1106	0.75	+1.0
1,276,651	-		Shew_1106	0.75	+5.6
1,276,683	+		Shew_1106	0.76	-1.3
1,276,691	-		Shew_1106	0.76	+0.0
1,276,708	+		Shew_1106	0.77	+2.0
1,276,708	+		Shew_1106	0.77	+0.8
1,276,708	+		Shew_1106	0.77	-0.1
1,276,716	-		Shew_1106	0.77	+1.6
1,276,716	-		Shew_1106	0.77	+1.4
1,276,781	+		Shew_1106	0.79	+0.8
1,276,781	+		Shew_1106	0.79	+0.9
1,276,781	+		Shew_1106	0.79	-0.3
1,276,781	+		Shew_1106	0.79	+1.2
1,276,831	+		Shew_1106	0.80	+1.3
1,276,839	-		Shew_1106	0.81	+1.2
1,276,843	+		Shew_1106	0.81	+1.4
1,276,843	+		Shew_1106	0.81	+1.4
1,276,843	+		Shew_1106	0.81	+1.0
1,276,843	+		Shew_1106	0.81	+0.6
1,276,848	+		Shew_1106	0.81	+1.0
1,276,851	-		Shew_1106	0.81	+2.6
1,276,851	-		Shew_1106	0.81	+5.1
1,276,851	-		Shew_1106	0.81	+0.6
1,276,851	-		Shew_1106	0.81	+1.4
1,276,851	-		Shew_1106	0.81	+0.9
1,276,851	-		Shew_1106	0.81	+0.8
1,276,851	-		Shew_1106	0.81	-1.0
1,276,851	-		Shew_1106	0.81	+1.8
1,276,851	-		Shew_1106	0.81	+0.8
1,276,856	-		Shew_1106	0.81	-0.4
1,276,856	-		Shew_1106	0.81	-3.1
1,276,890	-		Shew_1106	0.82	+1.3
1,276,892	+		Shew_1106	0.82	-3.3
1,276,910	+		Shew_1106	0.83	+1.2
1,276,910	+		Shew_1106	0.83	-1.8
1,276,915	+		Shew_1106	0.83	+1.6
1,276,916	-		Shew_1106	0.83	+0.9
1,276,923	-		Shew_1106	0.83	+0.3
1,276,925	+		Shew_1106	0.83	+0.1
1,276,935	-		Shew_1106	0.83	-1.1
1,276,938	-		Shew_1106	0.83	+0.7
1,276,941	-		Shew_1106	0.83	+1.0
1,277,020	-		Shew_1106	0.86	+0.6
1,277,027	-		Shew_1106	0.86	-0.8
1,277,037	+		Shew_1106	0.86	-0.3
1,277,045	+		Shew_1106	0.86	+1.1
1,277,045	+		Shew_1106	0.86	-1.4
1,277,045	+		Shew_1106	0.86	-1.8
1,277,045	+		Shew_1106	0.86	+0.3
1,277,045	+		Shew_1106	0.86	-0.1
1,277,053	-		Shew_1106	0.87	+3.1
1,277,053	-		Shew_1106	0.87	+0.4
1,277,071	+		Shew_1106	0.87	-0.7
1,277,074	+		Shew_1106	0.87	+1.3
1,277,074	+		Shew_1106	0.87	+0.6
1,277,074	+		Shew_1106	0.87	+0.9
1,277,074	+		Shew_1106	0.87	-0.8
1,277,079	-		Shew_1106	0.87	+1.0
1,277,082	-		Shew_1106	0.87	+0.9
1,277,082	-		Shew_1106	0.87	+1.6
1,277,082	-		Shew_1106	0.87	+1.2
1,277,082	-		Shew_1106	0.87	-0.8
1,277,082	-		Shew_1106	0.87	-0.1
1,277,082	-		Shew_1106	0.87	+1.5
1,277,086	+		Shew_1106	0.88	-0.8
1,277,093	+		Shew_1106	0.88	+0.9
1,277,108	-		Shew_1106	0.88	+0.4
1,277,142	+		Shew_1106	0.89	+1.2
1,277,142	+		Shew_1106	0.89	+0.7
1,277,143	+		Shew_1106	0.89	+0.9
1,277,143	+		Shew_1106	0.89	-1.0
1,277,143	+		Shew_1106	0.89	+0.1
1,277,151	-		Shew_1106	0.89	-1.4
1,277,226	+				+0.9
1,277,232	-				+1.0
1,277,234	+				+1.2
1,277,270	+				+1.4
1,277,278	-				+0.2
1,277,278	-				+1.0
1,277,280	+				+0.1
1,277,299	+				+0.9
1,277,307	-				-0.1
1,277,307	+				+0.4
1,277,308	+				+2.2
1,277,316	-				+1.9
1,277,342	+				+0.3
1,277,342	+				+0.8
1,277,351	+				+0.3
1,277,358	-				-3.1
1,277,368	+				-0.6
1,277,376	-				-1.3
1,277,376	-				-2.5
1,277,376	-				+0.0
1,277,376	-				-2.1
1,277,377	+				+0.9
1,277,377	+				+0.7
1,277,377	+				+1.2
1,277,377	+				-1.1
1,277,378	-				+1.2
1,277,384	+				+0.2
1,277,385	-				+1.7
1,277,385	-				+1.4
1,277,385	-				+2.4
1,277,385	-				-2.1
1,277,401	-				+1.6
1,277,408	+				+2.0
1,277,425	+				+1.2
1,277,425	+				+0.7
1,277,425	+				-2.7
1,277,425	+				+0.2
1,277,425	+				+0.0
1,277,425	+				+3.6
1,277,425	+				+2.1
1,277,425	+				+0.9
1,277,425	+				+0.8
1,277,425	+				+0.6
1,277,425	+				+1.0
1,277,425	+				+0.8
1,277,426	+				+0.8
1,277,433	-				+0.8
1,277,433	-				-0.5
1,277,433	-				+0.8
1,277,433	-				+1.3
1,277,433	-				-0.7
1,277,433	-				-0.2
1,277,433	-				+0.7
1,277,433	-				-0.8
1,277,435	-				+0.7
1,277,436	+				+0.8
1,277,440	-				+2.9
1,277,444	+				+1.0
1,277,452	+				+0.6
1,277,452	+				+0.9
1,277,452	+				-1.8
1,277,452	+				+1.6
1,277,452	-				+0.6
1,277,452	+				+1.2
1,277,452	+				+1.0
1,277,452	+				+0.9
1,277,452	+				-0.5
1,277,452	+				+1.1
1,277,452	-				+1.3
1,277,460	-				-3.1
1,277,460	-				+2.8
1,277,460	-				+1.0
1,277,460	-				+0.0
1,277,460	+				+0.5
1,277,460	-				+0.2
1,277,460	+				+0.6
1,277,460	-				+1.4
1,277,460	-				+2.2
1,277,460	-				+1.6
1,277,460	-				-0.4
1,277,460	-				+1.0
1,277,467	-				-2.4
1,277,467	+				+1.3
1,277,475	-				+1.7
1,277,476	-				+0.9
1,277,566	+				-3.1
1,277,585	+		Shew_1107	0.14	+1.7
1,277,632	+		Shew_1107	0.26	+1.4
1,277,653	+		Shew_1107	0.31	+0.8
1,277,676	-		Shew_1107	0.37	+2.1
1,277,676	-		Shew_1107	0.37	+2.2
1,277,684	-		Shew_1107	0.39	+3.1
1,277,690	+		Shew_1107	0.40	+1.4
1,277,736	+		Shew_1107	0.52	+0.5
1,277,744	-		Shew_1107	0.54	+3.7
1,277,744	-		Shew_1107	0.54	+0.9
1,277,748	+		Shew_1107	0.55	+1.4
1,277,756	-		Shew_1107	0.57	+0.1
1,277,776	-		Shew_1107	0.62	+1.2
1,277,779	+		Shew_1107	0.63	+1.2
1,277,828	+		Shew_1107	0.76	+2.2
1,277,828	-		Shew_1107	0.76	-0.2
1,277,889	-				+1.5
1,277,931	+				+0.4
1,277,939	-				-0.3
1,277,962	+				+2.1
1,277,967	+				+0.2
1,277,967	+				+1.7
1,277,967	+				+1.3
1,277,967	+				+0.8
1,277,967	+				-1.2
1,277,967	+				+0.2
1,277,970	-				+0.8
1,277,975	-				-0.1
1,277,975	-				-0.0
1,277,975	-				+1.2
1,277,975	-				+1.9
1,277,975	-				-3.7
1,277,995	+				+0.5
1,278,003	-				-0.7
1,278,003	-				-0.5
1,278,003	-				-0.1
1,278,003	-				+1.7
1,278,142	+				-1.3
1,278,150	-				+0.9
1,278,152	+				+0.6
1,278,152	+				+2.7
1,278,152	+				-1.2
1,278,162	+				+0.9
1,278,162	+				+1.5
1,278,165	-				-0.6
1,278,171	+				+0.4
1,278,227	+				+1.6
1,278,294	+				-1.4
1,278,294	+				+0.9
1,278,297	-				+2.6
1,278,297	-				+0.1
1,278,309	+		Shew_1108	0.10	+0.7
1,278,391	+		Shew_1108	0.27	+2.2
1,278,403	+		Shew_1108	0.29	+1.5
1,278,403	+		Shew_1108	0.29	+2.9
1,278,411	-		Shew_1108	0.31	+0.8
1,278,441	+		Shew_1108	0.37	+0.7
1,278,449	-		Shew_1108	0.39	+0.7
1,278,491	-		Shew_1108	0.47	-1.5
1,278,497	-		Shew_1108	0.48	+3.0
1,278,536	-		Shew_1108	0.56	+0.4
1,278,545	+		Shew_1108	0.58	+0.4
1,278,612	-		Shew_1108	0.72	+1.9
1,278,615	+		Shew_1108	0.72	+0.0
1,278,615	+		Shew_1108	0.72	-0.8
1,278,615	+		Shew_1108	0.72	-0.3
1,278,615	+		Shew_1108	0.72	+0.7
1,278,615	+		Shew_1108	0.72	+1.5
1,278,623	-		Shew_1108	0.74	-1.3
1,278,623	-		Shew_1108	0.74	-1.0
1,278,623	-		Shew_1108	0.74	-0.8
1,278,623	-		Shew_1108	0.74	+2.3
1,278,623	-		Shew_1108	0.74	-0.1
1,278,669	+		Shew_1108	0.83	-2.0
1,278,677	-		Shew_1108	0.85	+0.2
1,278,707	+				+0.6
1,278,731	-				-0.4
1,278,783	-				-0.0
1,278,868	+				+0.6
1,278,869	-				+0.4
1,278,876	+				+0.2
1,278,876	-				+0.7
1,278,884	-				+0.5
1,278,884	-				+0.3
1,278,884	-				+1.7
1,278,886	+				+1.2
1,278,886	+				-0.4
1,278,894	-				+1.3