Strain Fitness in Shewanella loihica PV-4 around Shew_1076

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1074 and Shew_1075 are separated by 169 nucleotidesShew_1075 and Shew_1076 are separated by 152 nucleotidesShew_1076 and Shew_1077 are separated by 75 nucleotidesShew_1077 and Shew_1078 are separated by 130 nucleotides Shew_1074: Shew_1074 - cytochrome B561 (RefSeq), at 1,237,896 to 1,238,591 _1074 Shew_1075: Shew_1075 - cytochrome c, class II (RefSeq), at 1,238,761 to 1,239,222 _1075 Shew_1076: Shew_1076 - Trp operon repressor (RefSeq), at 1,239,375 to 1,239,728 _1076 Shew_1077: Shew_1077 - hypothetical protein (RefSeq), at 1,239,804 to 1,240,235 _1077 Shew_1078: Shew_1078 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,240,366 to 1,240,980 _1078 Position (kb) 1239 1240Strain fitness (log2 ratio) -1 0 1at 1239.549 kb on - strand, within Shew_1076at 1239.580 kb on - strand, within Shew_1076at 1239.870 kb on - strand, within Shew_1077at 1239.882 kb on + strand, within Shew_1077at 1240.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,239,549 - Shew_1076 0.49 +0.4
1,239,580 - Shew_1076 0.58 -0.2
1,239,870 - Shew_1077 0.15 +0.9
1,239,882 + Shew_1077 0.18 +0.2
1,240,232 - +0.7

Or see this region's nucleotide sequence