Strain Fitness in Shewanella loihica PV-4 around Shew_1013

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1012 and Shew_1013 are separated by 27 nucleotidesShew_1013 and Shew_1014 are separated by 480 nucleotides Shew_1012: Shew_1012 - glutamate-1-semialdehyde-2,1-aminomutase (RefSeq), at 1,171,055 to 1,172,341 _1012 Shew_1013: Shew_1013 - aspartate carbamoyltransferase (RefSeq), at 1,172,369 to 1,173,388 _1013 Shew_1014: Shew_1014 - XRE family transcriptional regulator (RefSeq), at 1,173,869 to 1,174,375 _1014 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.134 kb on - strand, within Shew_1013at 1173.193 kb on - strand, within Shew_1013at 1174.232 kb on + strand, within Shew_1014

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,173,126 + Shew_1013 0.74 -6.5
1,173,126 + Shew_1013 0.74 -4.4
1,173,126 + Shew_1013 0.74 -5.1
1,173,134 - Shew_1013 0.75 -4.2
1,173,193 - Shew_1013 0.81 -6.2
1,174,232 + Shew_1014 0.72 +0.4

Or see this region's nucleotide sequence