Strain Fitness in Shewanella loihica PV-4 around Shew_0867

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0865 and Shew_0866 are separated by 197 nucleotidesShew_0866 and Shew_0867 are separated by 307 nucleotidesShew_0867 and Shew_0868 are separated by 119 nucleotides Shew_0865: Shew_0865 - cupin 2 domain-containing protein (RefSeq), at 986,821 to 987,279 _0865 Shew_0866: Shew_0866 - arginine repressor (RefSeq), at 987,477 to 987,947 _0866 Shew_0867: Shew_0867 - malate dehydrogenase (RefSeq), at 988,255 to 989,190 _0867 Shew_0868: Shew_0868 - trans-hexaprenyltranstransferase (RefSeq), at 989,310 to 990,281 _0868 Position (kb) 988 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1at 987.308 kb on + strandat 987.384 kb on - strandat 987.434 kb on - strandat 987.451 kb on + strandat 987.459 kb on - strandat 987.846 kb on - strand, within Shew_0866at 988.750 kb on - strand, within Shew_0867

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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987,308 + -0.3
987,384 - -0.1
987,434 - -1.6
987,451 + +0.1
987,459 - -0.6
987,846 - Shew_0866 0.78 -1.0
988,750 - Shew_0867 0.53 -3.6

Or see this region's nucleotide sequence