Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0853 and Shew_0854 are separated by 75 nucleotides Shew_0854 and Shew_0855 are separated by 30 nucleotides Shew_0855 and Shew_0856 are separated by 113 nucleotides Shew_0856 and Shew_0857 are separated by 134 nucleotides Shew_0857 and Shew_0858 are separated by 129 nucleotides
Shew_0853: Shew_0853 - ABC transporter-related protein (RefSeq), at 975,818 to 977,593
_0853
Shew_0854: Shew_0854 - hypothetical protein (RefSeq), at 977,669 to 977,926
_0854
Shew_0855: Shew_0855 - hypothetical protein (RefSeq), at 977,957 to 978,166
_0855
Shew_0856: Shew_0856 - phosphoglycerate mutase (RefSeq), at 978,280 to 978,816
_0856
Shew_0857: Shew_0857 - hypothetical protein (RefSeq), at 978,951 to 979,550
_0857
Shew_0858: Shew_0858 - oxidoreductase FAD/NAD(P)-binding subunit (RefSeq), at 979,680 to 980,420
_0858
Position (kb) 978
979 Strain fitness (log2 ratio) -1
0
1 at 977.748 kb on + strand, within Shew_0854 at 977.808 kb on - strand, within Shew_0854 at 978.259 kb on + strand at 978.434 kb on + strand, within Shew_0856 at 978.442 kb on - strand, within Shew_0856 at 978.473 kb on + strand, within Shew_0856 at 978.673 kb on + strand, within Shew_0856 at 978.678 kb on + strand, within Shew_0856 at 979.013 kb on + strand, within Shew_0857 at 979.282 kb on - strand, within Shew_0857 at 979.553 kb on - strand at 979.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 977,748 + Shew_0854 0.31 +0.2 977,808 - Shew_0854 0.54 +0.9 978,259 + +1.4 978,434 + Shew_0856 0.29 +0.9 978,442 - Shew_0856 0.30 +1.7 978,473 + Shew_0856 0.36 +0.8 978,673 + Shew_0856 0.73 +1.2 978,678 + Shew_0856 0.74 -0.6 979,013 + Shew_0857 0.10 +1.2 979,282 - Shew_0857 0.55 +1.3 979,553 - -1.1 979,642 - +1.1
Or see this region's nucleotide sequence