Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0807 and Shew_0808 are separated by 305 nucleotides Shew_0808 and Shew_0809 are separated by 105 nucleotides
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Shew_0809: Shew_0809 - formate dehydrogenase, alpha subunit (RefSeq), at 927,171 to 931,403
_0809
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 924.436 kb on + strand, within Shew_0807 at 924.466 kb on - strand, within Shew_0807 at 924.550 kb on - strand, within Shew_0807 at 924.601 kb on + strand at 924.601 kb on + strand at 924.893 kb on + strand at 924.981 kb on + strand at 925.094 kb on + strand at 925.102 kb on - strand at 925.102 kb on - strand at 925.541 kb on + strand at 925.565 kb on + strand at 925.573 kb on - strand, within Shew_0808 at 925.971 kb on - strand, within Shew_0808 at 926.123 kb on + strand, within Shew_0808 at 926.131 kb on - strand, within Shew_0808 at 926.162 kb on - strand, within Shew_0808 at 926.232 kb on + strand, within Shew_0808 at 926.374 kb on + strand, within Shew_0808 at 926.382 kb on - strand, within Shew_0808 at 926.395 kb on + strand, within Shew_0808 at 926.403 kb on - strand, within Shew_0808 at 926.525 kb on - strand, within Shew_0808 at 926.549 kb on + strand, within Shew_0808 at 926.770 kb on + strand, within Shew_0808 at 927.053 kb on + strand at 927.060 kb on - strand at 927.072 kb on + strand at 927.072 kb on + strand at 927.306 kb on + strand at 927.644 kb on + strand, within Shew_0809 at 927.644 kb on + strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.700 kb on - strand, within Shew_0809 at 927.720 kb on + strand, within Shew_0809 at 927.738 kb on + strand, within Shew_0809 at 927.836 kb on + strand, within Shew_0809 at 927.844 kb on - strand, within Shew_0809 at 927.846 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.040 kb on - strand, within Shew_0809
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 924,436 + Shew_0807 0.87 -0.3 924,466 - Shew_0807 0.88 +1.1 924,550 - Shew_0807 0.89 +0.3 924,601 + +0.5 924,601 + +1.1 924,893 + -0.6 924,981 + -0.3 925,094 + -1.4 925,102 - +1.6 925,102 - -1.1 925,541 + +0.7 925,565 + -1.4 925,573 - Shew_0808 0.10 +0.4 925,971 - Shew_0808 0.34 +0.5 926,123 + Shew_0808 0.43 -1.1 926,131 - Shew_0808 0.44 -0.3 926,162 - Shew_0808 0.46 -3.3 926,232 + Shew_0808 0.50 -0.8 926,374 + Shew_0808 0.58 -0.5 926,382 - Shew_0808 0.59 -1.3 926,395 + Shew_0808 0.60 -0.5 926,403 - Shew_0808 0.60 +0.1 926,525 - Shew_0808 0.68 -0.1 926,549 + Shew_0808 0.69 -0.6 926,770 + Shew_0808 0.82 -1.2 927,053 + -4.1 927,060 - -0.4 927,072 + +1.1 927,072 + -1.7 927,306 + -0.2 927,644 + Shew_0809 0.11 -0.1 927,644 + Shew_0809 0.11 -0.1 927,652 - Shew_0809 0.11 +0.3 927,652 - Shew_0809 0.11 +0.9 927,652 - Shew_0809 0.11 +0.6 927,652 - Shew_0809 0.11 +0.5 927,700 - Shew_0809 0.12 +0.0 927,720 + Shew_0809 0.13 -1.2 927,738 + Shew_0809 0.13 -0.1 927,836 + Shew_0809 0.16 -1.0 927,844 - Shew_0809 0.16 -0.3 927,846 + Shew_0809 0.16 -1.9 928,037 + Shew_0809 0.20 +0.0 928,037 + Shew_0809 0.20 +0.6 928,040 - Shew_0809 0.21 -0.6
Or see this region's nucleotide sequence