Strain Fitness in Shewanella loihica PV-4 around Shew_0799

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0798 and Shew_0799 are separated by 304 nucleotidesShew_0799 and Shew_0800 are separated by 33 nucleotides Shew_0798: Shew_0798 - hypothetical protein (RefSeq), at 910,987 to 911,424 _0798 Shew_0799: Shew_0799 - MarR family transcriptional regulator (RefSeq), at 911,729 to 912,214 _0799 Shew_0800: Shew_0800 - FAD dependent oxidoreductase (RefSeq), at 912,248 to 913,489 _0800 Position (kb) 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.910 kb on + strandat 911.039 kb on + strand, within Shew_0798at 911.147 kb on + strand, within Shew_0798at 911.155 kb on - strand, within Shew_0798at 911.155 kb on - strand, within Shew_0798at 911.252 kb on - strand, within Shew_0798at 911.575 kb on - strandat 911.705 kb on - strandat 912.110 kb on + strand, within Shew_0799at 912.211 kb on - strandat 912.330 kb on + strandat 912.406 kb on + strand, within Shew_0800at 912.607 kb on + strand, within Shew_0800at 912.607 kb on + strand, within Shew_0800at 912.625 kb on - strand, within Shew_0800at 912.750 kb on + strand, within Shew_0800at 912.758 kb on - strand, within Shew_0800at 912.803 kb on - strand, within Shew_0800at 912.891 kb on - strand, within Shew_0800

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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910,910 + -0.6
911,039 + Shew_0798 0.12 +0.2
911,147 + Shew_0798 0.37 -1.3
911,155 - Shew_0798 0.38 +0.1
911,155 - Shew_0798 0.38 +0.1
911,252 - Shew_0798 0.61 -3.3
911,575 - +0.6
911,705 - -0.4
912,110 + Shew_0799 0.78 -3.1
912,211 - -0.1
912,330 + -0.7
912,406 + Shew_0800 0.13 -0.1
912,607 + Shew_0800 0.29 -0.4
912,607 + Shew_0800 0.29 +0.1
912,625 - Shew_0800 0.30 -1.1
912,750 + Shew_0800 0.40 -1.1
912,758 - Shew_0800 0.41 -0.4
912,803 - Shew_0800 0.45 +0.2
912,891 - Shew_0800 0.52 -1.5

Or see this region's nucleotide sequence