Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0763 and Shew_0764 are separated by 186 nucleotides Shew_0764 and Shew_0765 are separated by 138 nucleotides Shew_0765 and Shew_0766 overlap by 1 nucleotides
Shew_0763: Shew_0763 - putative PAS/PAC sensor protein (RefSeq), at 867,403 to 869,619
_0763
Shew_0764: Shew_0764 - radical SAM domain-containing protein (RefSeq), at 869,806 to 870,408
_0764
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Shew_0766: Shew_0766 - RND family efflux transporter MFP subunit (RefSeq), at 873,696 to 874,919
_0766
Position (kb) 870
871
872
873
874 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 870.182 kb on - strand, within Shew_0764 at 870.222 kb on + strand, within Shew_0764 at 870.335 kb on - strand, within Shew_0764 at 870.396 kb on - strand at 870.402 kb on + strand at 870.545 kb on + strand at 870.665 kb on - strand at 870.665 kb on - strand at 870.944 kb on + strand, within Shew_0765 at 871.092 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.313 kb on - strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.385 kb on + strand, within Shew_0765 at 871.567 kb on + strand, within Shew_0765 at 871.667 kb on - strand, within Shew_0765 at 871.816 kb on + strand, within Shew_0765 at 871.943 kb on - strand, within Shew_0765 at 872.031 kb on - strand, within Shew_0765 at 872.179 kb on - strand, within Shew_0765 at 872.190 kb on + strand, within Shew_0765 at 872.196 kb on + strand, within Shew_0765 at 872.258 kb on - strand, within Shew_0765 at 872.340 kb on + strand, within Shew_0765 at 872.786 kb on + strand, within Shew_0765 at 872.801 kb on + strand, within Shew_0765 at 872.804 kb on - strand, within Shew_0765 at 872.984 kb on + strand, within Shew_0765 at 873.102 kb on - strand, within Shew_0765 at 873.107 kb on - strand, within Shew_0765 at 873.351 kb on + strand, within Shew_0765 at 873.558 kb on - strand at 873.583 kb on + strand at 873.593 kb on + strand at 873.601 kb on - strand at 873.601 kb on - strand at 873.675 kb on + strand at 873.757 kb on + strand at 873.765 kb on - strand at 873.856 kb on + strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.985 kb on + strand, within Shew_0766 at 874.040 kb on + strand, within Shew_0766 at 874.070 kb on + strand, within Shew_0766 at 874.130 kb on + strand, within Shew_0766 at 874.210 kb on + strand, within Shew_0766 at 874.226 kb on + strand, within Shew_0766 at 874.269 kb on + strand, within Shew_0766 at 874.296 kb on - strand, within Shew_0766 at 874.400 kb on - strand, within Shew_0766
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 870,182 - Shew_0764 0.62 +2.1 870,222 + Shew_0764 0.69 +0.0 870,335 - Shew_0764 0.88 +1.6 870,396 - +0.5 870,402 + -2.9 870,545 + +0.7 870,665 - -1.1 870,665 - -1.5 870,944 + Shew_0765 0.13 -1.3 871,092 + Shew_0765 0.17 +2.1 871,305 + Shew_0765 0.24 -1.7 871,305 + Shew_0765 0.24 -0.4 871,305 + Shew_0765 0.24 -1.4 871,313 - Shew_0765 0.24 -4.1 871,342 + Shew_0765 0.25 -1.3 871,342 + Shew_0765 0.25 -1.6 871,342 + Shew_0765 0.25 -1.3 871,385 + Shew_0765 0.27 -1.9 871,567 + Shew_0765 0.32 -2.0 871,667 - Shew_0765 0.36 -1.8 871,816 + Shew_0765 0.40 -1.5 871,943 - Shew_0765 0.44 -1.4 872,031 - Shew_0765 0.47 -2.4 872,179 - Shew_0765 0.52 +0.0 872,190 + Shew_0765 0.52 -2.1 872,196 + Shew_0765 0.52 -1.6 872,258 - Shew_0765 0.54 -1.3 872,340 + Shew_0765 0.57 +1.6 872,786 + Shew_0765 0.71 -1.4 872,801 + Shew_0765 0.72 -0.4 872,804 - Shew_0765 0.72 -0.8 872,984 + Shew_0765 0.77 -1.0 873,102 - Shew_0765 0.81 -1.7 873,107 - Shew_0765 0.81 -1.8 873,351 + Shew_0765 0.89 -1.6 873,558 - -0.0 873,583 + -2.1 873,593 + -1.7 873,601 - -2.3 873,601 - -1.1 873,675 + -1.7 873,757 + -1.2 873,765 - -1.0 873,856 + Shew_0766 0.13 -0.4 873,864 - Shew_0766 0.14 -0.4 873,864 - Shew_0766 0.14 -3.7 873,985 + Shew_0766 0.24 -1.6 874,040 + Shew_0766 0.28 +0.6 874,070 + Shew_0766 0.31 -2.3 874,130 + Shew_0766 0.35 -3.9 874,210 + Shew_0766 0.42 +1.6 874,226 + Shew_0766 0.43 -1.2 874,269 + Shew_0766 0.47 -2.2 874,296 - Shew_0766 0.49 -2.4 874,400 - Shew_0766 0.58 +1.0
Or see this region's nucleotide sequence