Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0717 and Shew_0718 are separated by 14 nucleotides Shew_0718 and Shew_0719 are separated by 380 nucleotides
Shew_0717: Shew_0717 - cobyric acid synthase (RefSeq), at 816,890 to 818,494
_0717
Shew_0718: Shew_0718 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 818,509 to 819,138
_0718
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Position (kb) 818
819
820 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 817.512 kb on + strand, within Shew_0717 at 817.540 kb on + strand, within Shew_0717 at 817.581 kb on + strand, within Shew_0717 at 817.599 kb on - strand, within Shew_0717 at 817.623 kb on + strand, within Shew_0717 at 818.054 kb on + strand, within Shew_0717 at 818.118 kb on - strand, within Shew_0717 at 818.256 kb on - strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.317 kb on - strand, within Shew_0717 at 818.433 kb on + strand at 818.664 kb on + strand, within Shew_0718 at 818.664 kb on + strand, within Shew_0718 at 819.563 kb on + strand at 819.575 kb on + strand at 819.635 kb on + strand, within Shew_0719 at 819.658 kb on + strand, within Shew_0719 at 819.763 kb on + strand, within Shew_0719 at 819.862 kb on + strand, within Shew_0719 at 819.922 kb on + strand, within Shew_0719 at 820.013 kb on + strand, within Shew_0719
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 817,512 + Shew_0717 0.39 +0.5 817,540 + Shew_0717 0.40 +0.1 817,581 + Shew_0717 0.43 +0.7 817,599 - Shew_0717 0.44 -3.6 817,623 + Shew_0717 0.46 +0.6 818,054 + Shew_0717 0.73 -1.1 818,118 - Shew_0717 0.77 -1.4 818,256 - Shew_0717 0.85 +0.2 818,307 + Shew_0717 0.88 +1.7 818,307 + Shew_0717 0.88 +0.6 818,307 + Shew_0717 0.88 -0.1 818,317 - Shew_0717 0.89 -1.9 818,433 + -0.4 818,664 + Shew_0718 0.25 -1.7 818,664 + Shew_0718 0.25 -5.3 819,563 + -1.8 819,575 + -0.5 819,635 + Shew_0719 0.14 -0.8 819,658 + Shew_0719 0.17 -3.2 819,763 + Shew_0719 0.30 -1.5 819,862 + Shew_0719 0.42 -1.4 819,922 + Shew_0719 0.49 -0.3 820,013 + Shew_0719 0.60 -1.4
Or see this region's nucleotide sequence