Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0704 and Shew_0705 are separated by 304 nucleotides Shew_0705 and Shew_0706 are separated by 100 nucleotides Shew_0706 and Shew_0707 are separated by 142 nucleotides
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Shew_0706: Shew_0706 - short-chain dehydrogenase/reductase SDR (RefSeq), at 800,542 to 801,219
_0706
Shew_0707: Shew_0707 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 801,362 to 801,841
_0707
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1
2
3 at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.433 kb on + strand at 799.433 kb on + strand at 799.530 kb on - strand at 799.546 kb on + strand at 799.855 kb on - strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.944 kb on - strand, within Shew_0705 at 800.062 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.372 kb on + strand at 800.522 kb on - strand at 800.525 kb on + strand at 800.525 kb on + strand at 800.530 kb on + strand at 800.533 kb on - strand at 800.540 kb on + strand at 800.809 kb on - strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 801.240 kb on + strand at 801.240 kb on + strand at 801.248 kb on - strand at 801.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 798,503 + -0.6 798,526 + -0.4 798,677 + Shew_0704 0.13 -0.2 798,701 - Shew_0704 0.17 +3.5 798,861 - Shew_0704 0.44 +0.0 799,040 - Shew_0704 0.74 -0.0 799,040 - Shew_0704 0.74 -0.1 799,433 + +1.0 799,433 + +1.3 799,530 - -0.8 799,546 + -0.4 799,855 - Shew_0705 0.38 -0.7 799,936 + Shew_0705 0.46 -0.7 799,936 + Shew_0705 0.46 -0.3 799,936 + Shew_0705 0.46 -0.1 799,936 + Shew_0705 0.46 +0.6 799,944 - Shew_0705 0.47 +1.2 800,062 + Shew_0705 0.60 -1.1 800,306 + Shew_0705 0.86 -0.5 800,306 + Shew_0705 0.86 -0.8 800,372 + -0.3 800,522 - +1.1 800,525 + +0.4 800,525 + +1.0 800,530 + -0.3 800,533 - +0.0 800,540 + +1.2 800,809 - Shew_0706 0.39 +0.8 800,982 + Shew_0706 0.65 -0.1 800,982 + Shew_0706 0.65 -0.4 801,240 + -0.5 801,240 + -0.6 801,248 - -0.3 801,248 - -1.7
Or see this region's nucleotide sequence