Strain Fitness in Shewanella loihica PV-4 around Shew_0667

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0666 and Shew_0667 overlap by 8 nucleotidesShew_0667 and Shew_0668 are separated by 481 nucleotides Shew_0666: Shew_0666 - sulfite reductase subunit beta (RefSeq), at 757,231 to 758,928 _0666 Shew_0667: Shew_0667 - phosphoadenosine phosphosulfate reductase (RefSeq), at 758,921 to 759,673 _0667 Shew_0668: Shew_0668 - hypothetical protein (RefSeq), at 760,155 to 761,870 _0668 Position (kb) 758 759 760Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 758.531 kb on + strand, within Shew_0666at 759.254 kb on + strand, within Shew_0667at 759.262 kb on - strand, within Shew_0667at 759.689 kb on - strandat 759.965 kb on + strandat 759.973 kb on - strandat 760.313 kb on + strandat 760.361 kb on + strand, within Shew_0668at 760.574 kb on - strand, within Shew_0668

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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758,531 + Shew_0666 0.77 -0.7
759,254 + Shew_0667 0.44 -3.5
759,262 - Shew_0667 0.45 -5.8
759,689 - +0.0
759,965 + -2.0
759,973 - +0.4
760,313 + +0.6
760,361 + Shew_0668 0.12 +1.6
760,574 - Shew_0668 0.24 -1.7

Or see this region's nucleotide sequence