Strain Fitness in Shewanella loihica PV-4 around Shew_0663

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0662 and Shew_0663 are separated by 6 nucleotidesShew_0663 and Shew_0664 overlap by 1 nucleotides Shew_0662: Shew_0662 - NAD(P) transhydrogenase, beta subunit (RefSeq), at 752,204 to 753,586 _0662 Shew_0663: Shew_0663 - oxidoreductase (RefSeq), at 753,593 to 753,868 _0663 Shew_0664: Shew_0664 - NAD(P) transhydrogenase subunit alpha (RefSeq), at 753,868 to 755,037 _0664 Position (kb) 753 754Strain fitness (log2 ratio) -1 0 1 2 3at 752.882 kb on + strand, within Shew_0662at 753.631 kb on + strand, within Shew_0663at 753.737 kb on - strand, within Shew_0663at 753.853 kb on - strandat 754.355 kb on + strand, within Shew_0664at 754.430 kb on - strand, within Shew_0664at 754.471 kb on - strand, within Shew_0664at 754.499 kb on - strand, within Shew_0664at 754.795 kb on - strand, within Shew_0664at 754.811 kb on + strand, within Shew_0664at 754.811 kb on + strand, within Shew_0664at 754.819 kb on - strand, within Shew_0664

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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752,882 + Shew_0662 0.49 +0.3
753,631 + Shew_0663 0.14 +0.1
753,737 - Shew_0663 0.52 +2.8
753,853 - +0.8
754,355 + Shew_0664 0.42 -0.0
754,430 - Shew_0664 0.48 +2.1
754,471 - Shew_0664 0.52 -1.4
754,499 - Shew_0664 0.54 -0.6
754,795 - Shew_0664 0.79 -0.2
754,811 + Shew_0664 0.81 +0.6
754,811 + Shew_0664 0.81 -0.4
754,819 - Shew_0664 0.81 -1.7

Or see this region's nucleotide sequence