Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0569 and Shew_0570 are separated by 334 nucleotides Shew_0570 and Shew_0571 overlap by 1 nucleotides Shew_0571 and Shew_0572 overlap by 1 nucleotides Shew_0572 and sspA are separated by 108 nucleotides
Shew_0569: Shew_0569 - HflC protein (RefSeq), at 644,958 to 645,836
_0569
Shew_0570: Shew_0570 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 646,171 to 646,761
_0570
Shew_0571: Shew_0571 - cytochrome b/b6 domain-containing protein (RefSeq), at 646,761 to 647,975
_0571
Shew_0572: Shew_0572 - cytochrome c1 (RefSeq), at 647,975 to 648,676
_0572
Shew_0573: sspA - stringent starvation protein A (RefSeq), at 648,785 to 649,414
sspA
Position (kb) 646
647
648 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 645.766 kb on + strand at 645.766 kb on + strand at 645.766 kb on + strand at 645.772 kb on + strand at 646.601 kb on - strand, within Shew_0570 at 646.783 kb on + strand at 647.008 kb on - strand, within Shew_0571 at 647.259 kb on - strand, within Shew_0571 at 648.665 kb on + strand at 648.673 kb on - strand at 648.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 645,766 + -0.1 645,766 + -0.7 645,766 + -0.6 645,772 + -2.5 646,601 - Shew_0570 0.73 -3.8 646,783 + -1.3 647,008 - Shew_0571 0.20 -2.9 647,259 - Shew_0571 0.41 -3.7 648,665 + +0.4 648,673 - +1.9 648,673 - +1.7
Or see this region's nucleotide sequence