Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0399 and Shew_0400 overlap by 1 nucleotides Shew_0400 and Shew_0401 overlap by 11 nucleotides Shew_0401 and Shew_0402 overlap by 8 nucleotides
Shew_0399: Shew_0399 - methylation site containing protein (RefSeq), at 448,358 to 448,909
_0399
Shew_0400: Shew_0400 - methylation site containing protein (RefSeq), at 448,909 to 449,706
_0400
Shew_0401: Shew_0401 - MSHA biogenesis protein MshP (RefSeq), at 449,696 to 450,133
_0401
Shew_0402: Shew_0402 - MSHA biogenesis protein MshQ (RefSeq), at 450,126 to 452,828
_0402
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 448.727 kb on - strand, within Shew_0399 at 448.743 kb on - strand, within Shew_0399 at 448.881 kb on + strand at 448.903 kb on + strand at 449.041 kb on + strand, within Shew_0400 at 449.097 kb on + strand, within Shew_0400 at 449.105 kb on - strand, within Shew_0400 at 449.105 kb on - strand, within Shew_0400 at 449.125 kb on - strand, within Shew_0400 at 449.252 kb on + strand, within Shew_0400 at 449.313 kb on - strand, within Shew_0400 at 449.363 kb on - strand, within Shew_0400 at 449.418 kb on - strand, within Shew_0400 at 449.418 kb on - strand, within Shew_0400 at 449.642 kb on + strand at 449.989 kb on - strand, within Shew_0401 at 450.014 kb on + strand, within Shew_0401 at 450.170 kb on + strand at 450.321 kb on - strand at 451.130 kb on + strand, within Shew_0402
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 448,727 - Shew_0399 0.67 -2.6 448,743 - Shew_0399 0.70 -2.0 448,881 + -1.7 448,903 + -0.7 449,041 + Shew_0400 0.17 -0.7 449,097 + Shew_0400 0.24 -2.0 449,105 - Shew_0400 0.25 -3.1 449,105 - Shew_0400 0.25 -1.3 449,125 - Shew_0400 0.27 -2.4 449,252 + Shew_0400 0.43 -1.2 449,313 - Shew_0400 0.51 -2.6 449,363 - Shew_0400 0.57 -2.4 449,418 - Shew_0400 0.64 -2.5 449,418 - Shew_0400 0.64 -2.0 449,642 + -1.3 449,989 - Shew_0401 0.67 -3.3 450,014 + Shew_0401 0.73 -2.1 450,170 + -3.3 450,321 - -1.5 451,130 + Shew_0402 0.37 -2.0
Or see this region's nucleotide sequence