Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0391 and Shew_0392 overlap by 4 nucleotides Shew_0392 and Shew_0393 are separated by 2 nucleotides
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Shew_0392: Shew_0392 - type II secretion system protein E (RefSeq), at 442,454 to 444,214
_0392
Shew_0393: Shew_0393 - type II secretion system protein (RefSeq), at 444,217 to 445,434
_0393
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 441.463 kb on - strand, within Shew_0391 at 441.751 kb on - strand, within Shew_0391 at 441.763 kb on - strand, within Shew_0391 at 441.768 kb on + strand, within Shew_0391 at 441.773 kb on + strand, within Shew_0391 at 441.832 kb on - strand, within Shew_0391 at 441.941 kb on + strand, within Shew_0391 at 442.038 kb on - strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.385 kb on - strand at 442.703 kb on + strand, within Shew_0392 at 442.834 kb on - strand, within Shew_0392 at 442.880 kb on + strand, within Shew_0392 at 443.010 kb on - strand, within Shew_0392 at 443.258 kb on - strand, within Shew_0392 at 443.349 kb on - strand, within Shew_0392 at 443.473 kb on + strand, within Shew_0392 at 443.727 kb on + strand, within Shew_0392 at 444.058 kb on - strand at 444.099 kb on + strand at 444.348 kb on + strand, within Shew_0393 at 444.466 kb on - strand, within Shew_0393 at 444.486 kb on + strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.731 kb on - strand, within Shew_0393 at 444.755 kb on - strand, within Shew_0393 at 444.834 kb on - strand, within Shew_0393 at 445.058 kb on + strand, within Shew_0393 at 445.066 kb on - strand, within Shew_0393 at 445.165 kb on - strand, within Shew_0393
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 441,463 - Shew_0391 0.14 -1.8 441,751 - Shew_0391 0.39 -3.0 441,763 - Shew_0391 0.40 -2.0 441,768 + Shew_0391 0.41 -0.5 441,773 + Shew_0391 0.41 +1.4 441,832 - Shew_0391 0.46 -2.2 441,941 + Shew_0391 0.55 -0.0 442,038 - Shew_0391 0.64 -0.4 442,049 + Shew_0391 0.65 -0.1 442,049 + Shew_0391 0.65 -0.5 442,057 - Shew_0391 0.65 -2.6 442,057 - Shew_0391 0.65 -1.9 442,057 - Shew_0391 0.65 -1.8 442,057 - Shew_0391 0.65 -1.3 442,057 - Shew_0391 0.65 -0.9 442,057 - Shew_0391 0.65 -2.1 442,057 - Shew_0391 0.65 -1.1 442,057 - Shew_0391 0.65 -2.3 442,385 - -1.7 442,703 + Shew_0392 0.14 -2.1 442,834 - Shew_0392 0.22 -1.9 442,880 + Shew_0392 0.24 -0.1 443,010 - Shew_0392 0.32 -1.3 443,258 - Shew_0392 0.46 -3.0 443,349 - Shew_0392 0.51 -3.7 443,473 + Shew_0392 0.58 -3.0 443,727 + Shew_0392 0.72 -2.8 444,058 - -1.9 444,099 + -2.9 444,348 + Shew_0393 0.11 -3.4 444,466 - Shew_0393 0.20 -0.6 444,486 + Shew_0393 0.22 -4.7 444,731 - Shew_0393 0.42 -3.0 444,731 - Shew_0393 0.42 -2.5 444,755 - Shew_0393 0.44 -3.1 444,834 - Shew_0393 0.51 -2.0 445,058 + Shew_0393 0.69 -2.8 445,066 - Shew_0393 0.70 -2.6 445,165 - Shew_0393 0.78 -2.2
Or see this region's nucleotide sequence