Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0386 and Shew_0387 overlap by 4 nucleotides Shew_0387 and Shew_0388 overlap by 20 nucleotides Shew_0388 and Shew_0389 are separated by 0 nucleotides Shew_0389 and Shew_0390 are separated by 4 nucleotides Shew_0390 and Shew_0391 overlap by 4 nucleotides
Shew_0386: Shew_0386 - fimbrial assembly family protein (RefSeq), at 437,133 to 437,738
_0386
Shew_0387: Shew_0387 - MSHA biogenesis protein MshJ (RefSeq), at 437,735 to 438,391
_0387
Shew_0388: Shew_0388 - MSHA biogenesis protein MshK (RefSeq), at 438,372 to 438,698
_0388
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Shew_0390: Shew_0390 - MSHA biogenesis protein MshM (RefSeq), at 440,395 to 441,300
_0390
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 437.874 kb on + strand, within Shew_0387 at 437.986 kb on + strand, within Shew_0387 at 438.177 kb on + strand, within Shew_0387 at 438.285 kb on - strand, within Shew_0387 at 438.300 kb on - strand, within Shew_0387 at 438.410 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.423 kb on - strand, within Shew_0388 at 438.453 kb on + strand, within Shew_0388 at 438.667 kb on + strand at 439.027 kb on - strand, within Shew_0389 at 439.065 kb on - strand, within Shew_0389 at 439.123 kb on + strand, within Shew_0389 at 439.157 kb on + strand, within Shew_0389 at 439.394 kb on + strand, within Shew_0389 at 439.394 kb on + strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.406 kb on + strand, within Shew_0389 at 439.520 kb on + strand, within Shew_0389 at 439.528 kb on - strand, within Shew_0389 at 439.643 kb on + strand, within Shew_0389 at 439.753 kb on - strand, within Shew_0389 at 439.766 kb on - strand, within Shew_0389 at 439.816 kb on + strand, within Shew_0389 at 439.853 kb on + strand, within Shew_0389 at 440.000 kb on + strand, within Shew_0389 at 440.075 kb on - strand, within Shew_0389 at 440.280 kb on - strand at 440.342 kb on + strand at 440.846 kb on - strand, within Shew_0390 at 441.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 437,874 + Shew_0387 0.21 -1.9 437,986 + Shew_0387 0.38 -2.4 438,177 + Shew_0387 0.67 -4.3 438,285 - Shew_0387 0.84 +1.0 438,300 - Shew_0387 0.86 -1.6 438,410 + Shew_0388 0.12 -3.0 438,415 + Shew_0388 0.13 -3.1 438,415 + Shew_0388 0.13 -2.4 438,415 + Shew_0388 0.13 -3.2 438,418 - Shew_0388 0.14 -4.2 438,418 - Shew_0388 0.14 -1.4 438,423 - Shew_0388 0.16 -2.2 438,453 + Shew_0388 0.25 -1.2 438,667 + -0.2 439,027 - Shew_0389 0.19 -3.7 439,065 - Shew_0389 0.22 -2.3 439,123 + Shew_0389 0.25 -2.4 439,157 + Shew_0389 0.27 -3.5 439,394 + Shew_0389 0.41 -2.0 439,394 + Shew_0389 0.41 -2.5 439,402 - Shew_0389 0.42 -2.2 439,402 - Shew_0389 0.42 -2.2 439,402 - Shew_0389 0.42 -1.6 439,406 + Shew_0389 0.42 -1.7 439,520 + Shew_0389 0.49 -2.7 439,528 - Shew_0389 0.49 -2.3 439,643 + Shew_0389 0.56 -2.2 439,753 - Shew_0389 0.62 -3.3 439,766 - Shew_0389 0.63 -3.9 439,816 + Shew_0389 0.66 -2.5 439,853 + Shew_0389 0.68 -0.9 440,000 + Shew_0389 0.77 -0.8 440,075 - Shew_0389 0.81 -2.9 440,280 - -2.2 440,342 + -2.9 440,846 - Shew_0390 0.50 -1.7 441,247 + -6.8
Or see this region's nucleotide sequence