Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0385 and Shew_0386 are separated by 0 nucleotides Shew_0386 and Shew_0387 overlap by 4 nucleotides Shew_0387 and Shew_0388 overlap by 20 nucleotides Shew_0388 and Shew_0389 are separated by 0 nucleotides
Shew_0385: Shew_0385 - biogenesis protein MshI (RefSeq), at 436,254 to 437,132
_0385
Shew_0386: Shew_0386 - fimbrial assembly family protein (RefSeq), at 437,133 to 437,738
_0386
Shew_0387: Shew_0387 - MSHA biogenesis protein MshJ (RefSeq), at 437,735 to 438,391
_0387
Shew_0388: Shew_0388 - MSHA biogenesis protein MshK (RefSeq), at 438,372 to 438,698
_0388
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Position (kb) 437
438 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 436.664 kb on + strand, within Shew_0385 at 436.664 kb on + strand, within Shew_0385 at 436.886 kb on - strand, within Shew_0385 at 437.362 kb on - strand, within Shew_0386 at 437.536 kb on + strand, within Shew_0386 at 437.643 kb on + strand, within Shew_0386 at 437.874 kb on + strand, within Shew_0387 at 437.986 kb on + strand, within Shew_0387 at 438.177 kb on + strand, within Shew_0387 at 438.285 kb on - strand, within Shew_0387 at 438.300 kb on - strand, within Shew_0387 at 438.410 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.415 kb on + strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.418 kb on - strand, within Shew_0388 at 438.423 kb on - strand, within Shew_0388 at 438.453 kb on + strand, within Shew_0388 at 438.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 436,664 + Shew_0385 0.47 -1.9 436,664 + Shew_0385 0.47 -2.0 436,886 - Shew_0385 0.72 -2.7 437,362 - Shew_0386 0.38 -2.5 437,536 + Shew_0386 0.67 -2.4 437,643 + Shew_0386 0.84 -2.6 437,874 + Shew_0387 0.21 -1.9 437,986 + Shew_0387 0.38 -2.4 438,177 + Shew_0387 0.67 -4.3 438,285 - Shew_0387 0.84 +1.0 438,300 - Shew_0387 0.86 -1.6 438,410 + Shew_0388 0.12 -3.0 438,415 + Shew_0388 0.13 -3.1 438,415 + Shew_0388 0.13 -2.4 438,415 + Shew_0388 0.13 -3.2 438,418 - Shew_0388 0.14 -4.2 438,418 - Shew_0388 0.14 -1.4 438,423 - Shew_0388 0.16 -2.2 438,453 + Shew_0388 0.25 -1.2 438,667 + -0.2
Or see this region's nucleotide sequence