Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0372 and Shew_0373 are separated by 21 nucleotides Shew_0373 and hslU are separated by 76 nucleotides hslU and Shew_0375 are separated by 55 nucleotides
Shew_0372: Shew_0372 - hypothetical protein (RefSeq), at 420,195 to 420,629
_0372
Shew_0373: Shew_0373 - hypothetical protein (RefSeq), at 420,651 to 421,046
_0373
Shew_0374: hslU - ATP-dependent protease ATP-binding subunit (RefSeq), at 421,123 to 422,448
hslU
Shew_0375: Shew_0375 - ATP-dependent protease peptidase subunit (RefSeq), at 422,504 to 423,028
_0375
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 420.254 kb on + strand, within Shew_0372 at 420.343 kb on + strand, within Shew_0372 at 420.613 kb on + strand at 420.780 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 420.886 kb on + strand, within Shew_0373 at 421.058 kb on + strand at 421.559 kb on + strand, within hslU at 421.793 kb on - strand, within hslU at 422.142 kb on + strand, within hslU at 422.150 kb on - strand, within hslU at 422.748 kb on + strand, within Shew_0375 at 423.158 kb on + strand at 423.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 420,254 + Shew_0372 0.14 -0.7 420,343 + Shew_0372 0.34 +0.2 420,613 + -0.2 420,780 + Shew_0373 0.33 -0.9 420,886 + Shew_0373 0.59 +1.1 420,886 + Shew_0373 0.59 -1.3 421,058 + -1.4 421,559 + hslU Shew_0374 0.33 -1.1 421,793 - hslU Shew_0374 0.51 -1.5 422,142 + hslU Shew_0374 0.77 -2.0 422,150 - hslU Shew_0374 0.77 +0.9 422,748 + Shew_0375 0.46 -0.1 423,158 + -1.6 423,412 - +0.7
Or see this region's nucleotide sequence