Strain Fitness in Shewanella loihica PV-4 around Shew_0322

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0320 and Shew_0321 are separated by 489 nucleotidesShew_0321 and Shew_0322 are separated by 5 nucleotidesShew_0322 and dapF are separated by 37 nucleotidesdapF and Shew_0324 are separated by 8 nucleotides Shew_0320: Shew_0320 - frataxin family protein (RefSeq), at 367,230 to 367,604 _0320 Shew_0321: Shew_0321 - hypothetical protein (RefSeq), at 368,094 to 368,261 _0321 Shew_0322: Shew_0322 - diaminopimelate decarboxylase (RefSeq), at 368,267 to 369,511 _0322 Shew_0323: dapF - diaminopimelate epimerase (RefSeq), at 369,549 to 370,388 dapF Shew_0324: Shew_0324 - hypothetical protein (RefSeq), at 370,397 to 371,023 _0324 Position (kb) 368 369 370Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 367.270 kb on - strand, within Shew_0320at 367.270 kb on - strand, within Shew_0320at 367.270 kb on - strand, within Shew_0320at 367.313 kb on - strand, within Shew_0320at 367.413 kb on - strand, within Shew_0320at 368.416 kb on - strand, within Shew_0322at 368.423 kb on + strand, within Shew_0322at 368.449 kb on - strand, within Shew_0322at 368.451 kb on + strand, within Shew_0322at 368.459 kb on - strand, within Shew_0322at 368.459 kb on - strand, within Shew_0322at 368.723 kb on + strand, within Shew_0322at 369.262 kb on - strand, within Shew_0322at 369.403 kb on - strandat 369.505 kb on + strandat 369.505 kb on + strandat 370.489 kb on + strand, within Shew_0324

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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367,270 - Shew_0320 0.11 -3.2
367,270 - Shew_0320 0.11 -0.6
367,270 - Shew_0320 0.11 -4.1
367,313 - Shew_0320 0.22 -3.3
367,413 - Shew_0320 0.49 -4.9
368,416 - Shew_0322 0.12 -2.8
368,423 + Shew_0322 0.13 -5.8
368,449 - Shew_0322 0.15 -8.3
368,451 + Shew_0322 0.15 -6.2
368,459 - Shew_0322 0.15 -1.6
368,459 - Shew_0322 0.15 -1.9
368,723 + Shew_0322 0.37 -6.7
369,262 - Shew_0322 0.80 -1.4
369,403 - -5.1
369,505 + +0.6
369,505 + -0.5
370,489 + Shew_0324 0.15 -0.2

Or see this region's nucleotide sequence