Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and cyaA are separated by 185 nucleotides cyaA and Shew_0320 are separated by 7 nucleotides Shew_0320 and Shew_0321 are separated by 489 nucleotides
Shew_0318: hemC - porphobilinogen deaminase (RefSeq), at 363,663 to 364,616
hemC
Shew_0319: cyaA - adenylate cyclase (RefSeq), at 364,802 to 367,222
cyaA
Shew_0320: Shew_0320 - frataxin family protein (RefSeq), at 367,230 to 367,604
_0320
Shew_0321: Shew_0321 - hypothetical protein (RefSeq), at 368,094 to 368,261
_0321
Position (kb) 364
365
366
367
368 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 364.765 kb on + strand at 365.033 kb on - strand at 365.042 kb on + strand at 365.196 kb on + strand, within cyaA at 365.297 kb on + strand, within cyaA at 365.317 kb on - strand, within cyaA at 365.458 kb on - strand, within cyaA at 365.510 kb on + strand, within cyaA at 365.510 kb on + strand, within cyaA at 365.518 kb on - strand, within cyaA at 365.829 kb on - strand, within cyaA at 365.855 kb on - strand, within cyaA at 365.855 kb on - strand, within cyaA at 366.124 kb on + strand, within cyaA at 366.132 kb on - strand, within cyaA at 366.222 kb on + strand, within cyaA at 366.356 kb on - strand, within cyaA at 366.595 kb on + strand, within cyaA at 366.603 kb on - strand, within cyaA at 367.053 kb on + strand at 367.262 kb on + strand at 367.262 kb on + strand at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.270 kb on - strand, within Shew_0320 at 367.313 kb on - strand, within Shew_0320 at 367.413 kb on - strand, within Shew_0320
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 364,765 + +1.7 365,033 - +2.9 365,042 + +2.5 365,196 + cyaA Shew_0319 0.16 +2.0 365,297 + cyaA Shew_0319 0.20 +1.8 365,317 - cyaA Shew_0319 0.21 +1.1 365,458 - cyaA Shew_0319 0.27 +0.4 365,510 + cyaA Shew_0319 0.29 +3.2 365,510 + cyaA Shew_0319 0.29 +2.5 365,518 - cyaA Shew_0319 0.30 +2.4 365,829 - cyaA Shew_0319 0.42 +2.5 365,855 - cyaA Shew_0319 0.43 +2.7 365,855 - cyaA Shew_0319 0.43 -0.7 366,124 + cyaA Shew_0319 0.55 +2.8 366,132 - cyaA Shew_0319 0.55 +0.0 366,222 + cyaA Shew_0319 0.59 +2.7 366,356 - cyaA Shew_0319 0.64 +2.8 366,595 + cyaA Shew_0319 0.74 +2.6 366,603 - cyaA Shew_0319 0.74 +0.6 367,053 + +2.3 367,262 + -2.4 367,262 + -3.4 367,270 - Shew_0320 0.11 -3.2 367,270 - Shew_0320 0.11 -0.6 367,270 - Shew_0320 0.11 -4.1 367,313 - Shew_0320 0.22 -3.3 367,413 - Shew_0320 0.49 -4.9
Or see this region's nucleotide sequence