Strain Fitness in Shewanella loihica PV-4 around Shew_0293

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0292 and Shew_0293 are separated by 1 nucleotidesShew_0293 and Shew_0294 are separated by 393 nucleotides Shew_0292: Shew_0292 - dihydroxy-acid dehydratase (RefSeq), at 311,545 to 313,395 _0292 Shew_0293: Shew_0293 - threonine dehydratase (RefSeq), at 313,397 to 314,947 _0293 Shew_0294: Shew_0294 - alanine--glyoxylate transaminase (RefSeq), at 315,341 to 316,483 _0294 Position (kb) 313 314 315Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 312.456 kb on + strand, within Shew_0292at 312.477 kb on + strand, within Shew_0292at 312.477 kb on + strand, within Shew_0292at 312.548 kb on + strand, within Shew_0292at 312.564 kb on - strand, within Shew_0292at 312.564 kb on - strand, within Shew_0292at 312.877 kb on + strand, within Shew_0292at 312.877 kb on + strand, within Shew_0292at 312.996 kb on - strand, within Shew_0292at 313.214 kb on + strandat 313.244 kb on - strandat 313.263 kb on + strandat 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.593 kb on - strand, within Shew_0293at 313.724 kb on + strand, within Shew_0293at 313.724 kb on + strand, within Shew_0293at 313.732 kb on - strand, within Shew_0293at 313.894 kb on + strand, within Shew_0293at 313.902 kb on - strand, within Shew_0293at 313.953 kb on - strand, within Shew_0293at 314.003 kb on + strand, within Shew_0293at 314.066 kb on - strand, within Shew_0293at 314.298 kb on - strand, within Shew_0293at 314.595 kb on - strand, within Shew_0293at 314.753 kb on - strand, within Shew_0293at 314.834 kb on - strandat 314.834 kb on - strandat 314.900 kb on - strandat 315.240 kb on - strandat 315.335 kb on + strandat 315.365 kb on - strandat 315.554 kb on + strand, within Shew_0294at 315.593 kb on - strand, within Shew_0294

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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312,456 + Shew_0292 0.49 -4.9
312,477 + Shew_0292 0.50 -6.5
312,477 + Shew_0292 0.50 -5.2
312,548 + Shew_0292 0.54 -4.9
312,564 - Shew_0292 0.55 -1.6
312,564 - Shew_0292 0.55 -3.4
312,877 + Shew_0292 0.72 -4.6
312,877 + Shew_0292 0.72 -6.8
312,996 - Shew_0292 0.78 -3.9
313,214 + -5.2
313,244 - -6.0
313,263 + -4.3
313,575 + Shew_0293 0.11 -7.0
313,575 + Shew_0293 0.11 -6.1
313,575 + Shew_0293 0.11 -6.4
313,575 + Shew_0293 0.11 -4.3
313,575 + Shew_0293 0.11 -5.2
313,575 + Shew_0293 0.11 -5.2
313,575 + Shew_0293 0.11 -6.3
313,575 + Shew_0293 0.11 -6.3
313,575 + Shew_0293 0.11 -5.7
313,575 + Shew_0293 0.11 -2.4
313,583 - Shew_0293 0.12 -1.4
313,583 - Shew_0293 0.12 -5.0
313,583 - Shew_0293 0.12 -2.9
313,583 - Shew_0293 0.12 -2.2
313,593 - Shew_0293 0.13 -3.3
313,724 + Shew_0293 0.21 -5.3
313,724 + Shew_0293 0.21 -3.8
313,732 - Shew_0293 0.22 -0.7
313,894 + Shew_0293 0.32 -5.1
313,902 - Shew_0293 0.33 -3.6
313,953 - Shew_0293 0.36 -6.4
314,003 + Shew_0293 0.39 -6.0
314,066 - Shew_0293 0.43 -4.2
314,298 - Shew_0293 0.58 -5.1
314,595 - Shew_0293 0.77 -3.3
314,753 - Shew_0293 0.87 -3.6
314,834 - -1.3
314,834 - -5.1
314,900 - -0.6
315,240 - +0.5
315,335 + -2.4
315,365 - +0.7
315,554 + Shew_0294 0.19 -1.1
315,593 - Shew_0294 0.22 +0.6

Or see this region's nucleotide sequence