Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0286 and Shew_0287 are separated by 67 nucleotides Shew_0287 and Shew_0288 are separated by 192 nucleotides
Shew_0286: Shew_0286 - extracellular solute-binding protein (RefSeq), at 304,599 to 305,408
_0286
Shew_0287: Shew_0287 - DNA-binding transcriptional regulator IlvY (RefSeq), at 305,476 to 306,360
_0287
Shew_0288: Shew_0288 - ketol-acid reductoisomerase (RefSeq), at 306,553 to 308,034
_0288
Position (kb) 305
306
307 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 304.786 kb on + strand, within Shew_0286 at 304.794 kb on - strand, within Shew_0286 at 305.014 kb on - strand, within Shew_0286 at 305.014 kb on - strand, within Shew_0286 at 305.373 kb on + strand at 305.651 kb on + strand, within Shew_0287 at 305.656 kb on + strand, within Shew_0287 at 305.657 kb on - strand, within Shew_0287 at 305.709 kb on + strand, within Shew_0287 at 305.824 kb on + strand, within Shew_0287 at 306.262 kb on + strand, within Shew_0287 at 306.267 kb on + strand, within Shew_0287 at 306.270 kb on - strand, within Shew_0287 at 306.275 kb on - strand at 306.275 kb on - strand at 306.310 kb on + strand at 306.317 kb on + strand at 306.319 kb on - strand at 306.698 kb on + strand at 306.698 kb on + strand at 306.698 kb on + strand at 306.743 kb on + strand, within Shew_0288 at 306.777 kb on + strand, within Shew_0288 at 306.973 kb on + strand, within Shew_0288 at 307.072 kb on - strand, within Shew_0288 at 307.112 kb on + strand, within Shew_0288 at 307.203 kb on + strand, within Shew_0288 at 307.334 kb on + strand, within Shew_0288
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 304,786 + Shew_0286 0.23 +0.2 304,794 - Shew_0286 0.24 -0.9 305,014 - Shew_0286 0.51 -2.1 305,014 - Shew_0286 0.51 -0.1 305,373 + -0.7 305,651 + Shew_0287 0.20 -4.6 305,656 + Shew_0287 0.20 -2.5 305,657 - Shew_0287 0.20 -5.5 305,709 + Shew_0287 0.26 -1.7 305,824 + Shew_0287 0.39 -5.5 306,262 + Shew_0287 0.89 -3.9 306,267 + Shew_0287 0.89 -3.2 306,270 - Shew_0287 0.90 -2.9 306,275 - -5.3 306,275 - -7.0 306,310 + -2.4 306,317 + -6.7 306,319 - -6.5 306,698 + -6.3 306,698 + -4.3 306,698 + -3.3 306,743 + Shew_0288 0.13 -7.5 306,777 + Shew_0288 0.15 -3.6 306,973 + Shew_0288 0.28 -6.2 307,072 - Shew_0288 0.35 -3.6 307,112 + Shew_0288 0.38 -2.5 307,203 + Shew_0288 0.44 -5.8 307,334 + Shew_0288 0.53 -6.7
Or see this region's nucleotide sequence