Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0258 and Shew_0259 are separated by 112 nucleotides Shew_0259 and Shew_0260 are separated by 322 nucleotides Shew_0260 and Shew_0261 are separated by 250 nucleotides Shew_0261 and Shew_0262 are separated by 17 nucleotides
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Shew_0259: Shew_0259 - hypothetical protein (RefSeq), at 278,814 to 279,215
_0259
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Shew_0261: Shew_0261 - hypothetical protein (RefSeq), at 280,637 to 280,948
_0261
Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420
_0262
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand at 278.847 kb on - strand at 278.902 kb on + strand, within Shew_0259 at 279.095 kb on + strand, within Shew_0259 at 279.103 kb on - strand, within Shew_0259 at 279.239 kb on + strand at 279.256 kb on - strand at 279.515 kb on + strand at 279.583 kb on - strand at 279.593 kb on - strand at 279.598 kb on - strand at 279.875 kb on - strand, within Shew_0260 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260 at 280.308 kb on - strand at 280.380 kb on + strand at 280.388 kb on - strand at 280.743 kb on - strand, within Shew_0261 at 280.950 kb on + strand at 280.958 kb on - strand at 280.964 kb on - strand at 281.023 kb on + strand at 281.092 kb on - strand at 281.163 kb on + strand, within Shew_0262 at 281.243 kb on - strand, within Shew_0262
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 278,562 - Shew_0258 0.85 -0.5 278,562 - Shew_0258 0.85 -0.9 278,613 + -1.0 278,847 - -0.2 278,902 + Shew_0259 0.22 +0.2 279,095 + Shew_0259 0.70 -0.6 279,103 - Shew_0259 0.72 +1.9 279,239 + +0.4 279,256 - -0.3 279,515 + -0.0 279,583 - -0.7 279,593 - -0.4 279,598 - +1.0 279,875 - Shew_0260 0.40 -0.3 279,972 + Shew_0260 0.51 -1.0 280,112 + Shew_0260 0.68 -2.3 280,308 - -0.8 280,380 + -0.4 280,388 - -0.3 280,743 - Shew_0261 0.34 -2.6 280,950 + +1.2 280,958 - +0.1 280,964 - +0.5 281,023 + -0.8 281,092 - -0.2 281,163 + Shew_0262 0.14 +0.5 281,243 - Shew_0262 0.19 +0.4
Or see this region's nucleotide sequence