Strain Fitness in Shewanella loihica PV-4 around Shew_0114

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0113 and Shew_0114 are separated by 21 nucleotidesShew_0114 and Shew_0115 overlap by 4 nucleotidesShew_0115 and Shew_0116 are separated by 163 nucleotides Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896 _0113 Shew_0114: Shew_0114 - response regulator receiver protein (RefSeq), at 126,918 to 127,280 _0114 Shew_0115: Shew_0115 - hypothetical protein (RefSeq), at 127,277 to 127,576 _0115 Shew_0116: Shew_0116 - electron transport protein SCO1/SenC (RefSeq), at 127,740 to 128,375 _0116 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2 3at 126.187 kb on + strand, within Shew_0113at 126.223 kb on + strand, within Shew_0113at 126.485 kb on + strand, within Shew_0113at 126.551 kb on + strand, within Shew_0113at 126.842 kb on + strandat 126.921 kb on + strandat 126.921 kb on + strandat 126.974 kb on - strand, within Shew_0114at 127.124 kb on + strand, within Shew_0114at 127.207 kb on - strand, within Shew_0114at 127.228 kb on - strand, within Shew_0114at 127.350 kb on - strand, within Shew_0115at 127.817 kb on + strand, within Shew_0116at 127.874 kb on - strand, within Shew_0116at 127.933 kb on + strand, within Shew_0116at 128.238 kb on + strand, within Shew_0116at 128.260 kb on - strand, within Shew_0116

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
126,187 + Shew_0113 0.66 +1.3
126,223 + Shew_0113 0.67 +0.8
126,485 + Shew_0113 0.80 +0.3
126,551 + Shew_0113 0.83 -1.4
126,842 + -2.1
126,921 + +0.7
126,921 + -1.7
126,974 - Shew_0114 0.15 -0.1
127,124 + Shew_0114 0.57 -1.8
127,207 - Shew_0114 0.80 +0.5
127,228 - Shew_0114 0.85 -0.2
127,350 - Shew_0115 0.24 -0.3
127,817 + Shew_0116 0.12 +0.4
127,874 - Shew_0116 0.21 +3.3
127,933 + Shew_0116 0.30 -0.6
128,238 + Shew_0116 0.78 +0.5
128,260 - Shew_0116 0.82 +0.9

Or see this region's nucleotide sequence